Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_H09
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    26   4.1  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    26   4.1  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   7.1  

>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 288 FIQKISKLFIFDMILCKYKCHRNFNV 365
           F++  SK+F F    C+ KCH+NF +
Sbjct: 21  FVRNDSKVFRF----CRSKCHKNFKM 42


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 488 NSNMLLSTNKNIKLDVSKCYL 550
           N+N LL  +  IKL+ S CYL
Sbjct: 185 NANKLLMQDGGIKLEASMCYL 205


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 513 FVESNILLLLYLSTTKYIYFF 451
           +++  ILL+L LST  + YFF
Sbjct: 27  WIKHGILLILVLSTVIFFYFF 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,755
Number of Sequences: 5004
Number of extensions: 35767
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)