Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_H08
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    30   0.25 
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    27   3.1  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   9.5  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   9.5  

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -3

Query: 325 YFRSKRRNYSYRSDDSYRTDLESKLEDGFHEYCHPLNALTR 203
           +F++  R Y +   D + +D E ++   F+ + +P+ +LTR
Sbjct: 360 FFQNSAREYMFSLTDFFYSDFELRVSYDFYGHDYPIKSLTR 400


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -2

Query: 500 NQLGFQRYGSCRFIPRILQVYGREM*AVGPVYINCSLAGQGDQTSA 363
           N  G + YG C F+   L+V    +     + INC  A +G    A
Sbjct: 198 NAFGARSYGECEFVSSFLKVVIVIIFFFVAIIINCGAAPKGGYIGA 243


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -3

Query: 358 YHKEGKNAAWDYFRSKRRNYSYRSDDSYRTDLESKLEDGFHEYCHPLNALTR 203
           Y   G +   DYF  K+R    ++   Y++  E    D FH     +N  T+
Sbjct: 25  YESVGFHDYADYFSRKQRKLQNQNAALYKSIDEDSKSDLFHGLAIAINGYTK 76


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -3

Query: 547 QKLVELLNRRYSELKEINSASNDMAVADSYRE 452
           QK+++  N +Y E+ ++     D  +  SY++
Sbjct: 104 QKIIKYKNHQYYEILDLKKTCTDTEIKKSYKK 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,100
Number of Sequences: 5004
Number of extensions: 47617
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)