Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_H08
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical ...    27   8.8  
AF043700-6|AAB97569.2|  443|Caenorhabditis elegans Hypothetical ...    27   8.8  

>AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical
           protein Y32B12B.3 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 396 TINIDRTDGLHFPSIYLQYSR 458
           +INIDR   L+FP  Y +Y R
Sbjct: 101 SINIDRLGALYFPIFYFKYHR 121


>Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical
           protein B0035.6 protein.
          Length = 727

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/59 (27%), Positives = 35/59 (59%)
 Frame = +2

Query: 98  TVLVVKKSVGCFRIIFLIVYLFS*CHSQIVSYTELTSECVQRVTILMKTIFQFRFEVCS 274
           T+ V+ + + C  II + V+  S C  +++ ++ +T E  +++  +MKT F+  FE+ +
Sbjct: 508 TIEVLTEYLDC--IITMGVFDIS-CADELMRHSSVTFESSEQLEKVMKTAFEENFEIAN 563


>AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical
           protein F56C3.2 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -3

Query: 556 VNKQKLVELLNRRYSELKEINSASNDMAVADSYREYCRY 440
           +  +++V+L   +Y+  KE+ +  ND A+A  Y++YC +
Sbjct: 331 IELKEIVQLEQWKYA--KELVTEFNDGAIAVRYQDYCHF 367


>AF043700-6|AAB97569.2|  443|Caenorhabditis elegans Hypothetical
           protein K09H9.2 protein.
          Length = 443

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 544 KLVELLNRRYSELKEINSASNDMAVADSYREYCRYMDGKCKPSVLSILI 398
           KL +LLN     ++E+  A ND+ V        RY+  K +  +L +++
Sbjct: 213 KLRDLLNSVQMSVEEVKIALNDLPVVKFSSGRYRYLSHKYRGEMLGLIV 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,496,719
Number of Sequences: 27780
Number of extensions: 267931
Number of successful extensions: 683
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)