Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_H07
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 28 0.87
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 1.1
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 27 2.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 6.1
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 25 6.1
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 25 6.1
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 8.1
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 25 8.1
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 25 8.1
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 8.1
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 8.1
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 25 8.1
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 28.3 bits (60), Expect = 0.87
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = +2
Query: 329 TTPSRFTNTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHPKNAMMKAMPPTIIQATGA 508
TTP T TITP V + I T M A +T M+ + + A T ++ T
Sbjct: 108 TTPMVETTTITPMVETTTI-TPMVEAMITLMEETMTTPMEETTTILPMAAMTTPMEETTT 166
Query: 509 TLKLVSDSTV 538
T +V +T+
Sbjct: 167 TTPMVETTTI 176
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.1
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 320 IAAT-TPSRFTNTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHPK-NAMMKAMPPTII 493
+A T TP+ + SFS+ +T VTS + S++ P N+ +PPT
Sbjct: 30 VATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTS 89
Query: 494 QATGATL 514
T T+
Sbjct: 90 MNTTTTV 96
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 27.1 bits (57), Expect = 2.0
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = +2
Query: 329 TTPSRFTNTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHPKNAMM-------KAMPPT 487
+ P+ TN + K + N S ++ TS+ LS AP+ PK A + K P
Sbjct: 86 SNPTSKTNNVRAKAR-NIRNPSQRLRPSTSLARLSNNAPRIPKEASLHENSISSKESPSV 144
Query: 488 IIQATGATLKLVSDSTVS-MSANCK*TANP 574
AT+ S S+++ MS+N + A P
Sbjct: 145 TTSKHVATITKPSTSSIARMSSNARIAAIP 174
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 176 QGVVEQHVMGRVKDRYEPGPVGPQQLN 256
Q VV++ V VK+ P P PQ LN
Sbjct: 1165 QNVVDESVTRVVKELPVPAPAAPQTLN 1191
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 22 VAGVVREAQSEDDGHQFNGGDHD 90
+ G++ E Q+ DD + NG D D
Sbjct: 131 IPGMITENQTNDDAKEVNGSDVD 153
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 301 LVHPVRDSSNYSVEIHKH-HYAQ 366
LVH V ++ YSV + +H HY Q
Sbjct: 287 LVHLVHETLQYSVRLEQHFHYTQ 309
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -3
Query: 306 NKTFQQDQDTFHVIEHRFSCCGPTGPGSYLSLTLPITC 193
N F DQD +VI FS P+ G + TC
Sbjct: 191 NPLFFGDQDNGYVISQSFSLRDPSARGGLRRYAIIATC 228
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 307 HPVRDSSNYSVEIHKHHYAQGQFQ 378
HP +DS Y+ +H +A +FQ
Sbjct: 511 HPNKDSEVYTKNLHNKRFASVRFQ 534
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 8.1
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -2
Query: 385 DGTETDLGRNGVCESRRSSCCY 320
DG L + +C+ ++ +CCY
Sbjct: 342 DGKTCKLTKGSLCDDQQDACCY 363
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -3
Query: 393 LVLMALKLTLGVMVFVNLDGVVAAIPNWMNKTFQQDQDTFH 271
+V+++L +++GVM + +V I +W F + +T H
Sbjct: 1106 VVIISLGISIGVMFLIMSGSIVVEIIHWF---FSEHVETLH 1143
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 415 CHLRDLHAGVDGTETDLGRNGV 350
C LRD DG +T++G G+
Sbjct: 683 CLLRDFEILADGDQTEVGEKGI 704
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 319 DSSNYSVEIHKHHYAQGQFQCHQHQHE 399
D+ + ++E +Y +G+F CH HE
Sbjct: 286 DTCSQNLEHVGFYYREGKFYCHLDYHE 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,093
Number of Sequences: 5004
Number of extensions: 41711
Number of successful extensions: 146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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