Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_H06
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    93   3e-20
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    61   2e-10
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    52   7e-08
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    27   1.8  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   7.3  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    25   9.7  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 41/61 (67%), Positives = 48/61 (78%)
 Frame = -1

Query: 660 GTLTDGXKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAYGQQGH 481
           GTLT+G KFDSS DRG PF   IG  ++IRGWDEGV KMS+GE+AKLT +PDY YG +G 
Sbjct: 29  GTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRGF 88

Query: 480 P 478
           P
Sbjct: 89  P 89



 Score = 34.7 bits (76), Expect = 0.012
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = -2

Query: 476 GVIPPNSTLIFDVELLRL 423
           G+IPPNSTL+FDVELL +
Sbjct: 90  GLIPPNSTLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 30/61 (49%), Positives = 36/61 (59%)
 Frame = -1

Query: 660 GTLTDGXKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAYGQQGH 481
           G L +G  FD +  +GKPF F +G+ EVIRGWD GVA M  G   K+T     AYG Q  
Sbjct: 284 GKLENGKVFDKNT-KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQSI 342

Query: 480 P 478
           P
Sbjct: 343 P 343



 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = -2

Query: 470 IPPNSTLIFDVELLRL 423
           IP NSTL+F+V+L+R+
Sbjct: 345 IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 26/61 (42%), Positives = 33/61 (54%)
 Frame = -1

Query: 660 GTLTDGXKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAYGQQGH 481
           G LT+G  FD +   GKPF F +G  EVI+GWD G+  M VG    +      AYG +  
Sbjct: 285 GRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYGSKRL 343

Query: 480 P 478
           P
Sbjct: 344 P 344



 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 491 SKATXGVIPPNSTLIFDVELL 429
           SK   G IP NS L+FDV+LL
Sbjct: 340 SKRLPG-IPANSDLVFDVKLL 359


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 157 TFLKSILSLXFHHNTYLHLRDNCIYIY 77
           TFLK I     H   Y + +DNCIY+Y
Sbjct: 255 TFLKGISRRSGHQMVY-NPKDNCIYLY 280


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 506 SGEQVNLARSPTDIFATPSSQPRITSDFPILNLKGLPRSRDESN 637
           +G   NLAR P+D+   P +    +S      L  LP+   E N
Sbjct: 216 AGSVPNLARIPSDVKPVPPAHLSASSTVGPRILPSLPKDTTEDN 259


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 615 GKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAY 496
           G  F  R  +S + R W   +  MSV   AKL    + AY
Sbjct: 176 GPAFSTR-AESNLYRSWGASIINMSVIPEAKLAREAEIAY 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,798
Number of Sequences: 5004
Number of extensions: 46663
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)