Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_H05
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 270 1e-72
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 262 3e-70
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 208 5e-54
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 198 3e-51
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 192 2e-49
06_03_0067 - 16167420-16167845,16168291-16168406,16168634-161688... 28 9.7
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 28 9.7
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 270 bits (661), Expect = 1e-72
Identities = 133/197 (67%), Positives = 156/197 (79%), Gaps = 5/197 (2%)
Frame = -3
Query: 776 LGMDVAAXEFF--KDGKYDLDFKNPDSNPGDY-LSSEKLADVYLDFIKDFPMVSIEDPFD 606
+GMDVAA EF+ KD YDL+FK D+N G + +S + L DVY F+ ++P+VSIEDPFD
Sbjct: 277 IGMDVAASEFYSEKDKTYDLNFKE-DNNDGSHKISGDSLKDVYKSFVSEYPIVSIEDPFD 335
Query: 605 QDDWSAWANLTGRT--PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESID 432
QDDW+ +A LT +QIVGDDL VTNP R+A A+ +K CN LLLKVNQIGSVTESI+
Sbjct: 336 QDDWATYAKLTDEIGQQVQIVGDDLLVTNPTRVAKAISEKTCNALLLKVNQIGSVTESIE 395
Query: 431 AHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEE 252
A ++K+ GWG M SHRSGETEDTFIADL VGLSTGQIKTGAPCRSERLAKYNQ+LRIEE
Sbjct: 396 AVRMSKRAGWGVMASHRSGETEDTFIADLSVGLSTGQIKTGAPCRSERLAKYNQLLRIEE 455
Query: 251 ELGVNAKYAGKNFRRPV 201
ELG A YAG+ FR PV
Sbjct: 456 ELGDAAVYAGEKFRAPV 472
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 262 bits (641), Expect = 3e-70
Identities = 124/172 (72%), Positives = 143/172 (83%), Gaps = 1/172 (0%)
Frame = -3
Query: 776 LGMDVAAXEFF-KDGKYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPMVSIEDPFDQD 600
+GMDVAA EF KDG YDL+FKN ++ LS+++L D+Y +F+KDFP+VSIEDPFDQD
Sbjct: 289 IGMDVAASEFLTKDGSYDLNFKNQPNDGAHVLSAQRLCDLYKEFVKDFPIVSIEDPFDQD 348
Query: 599 DWSAWANLTGRTPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLL 420
DWS+WA+L IQIVGDDL VTNPKRIA A+ KKACN LLLKVNQIG+VTESI A L
Sbjct: 349 DWSSWASLQSSVNIQIVGDDLLVTNPKRIAEAIGKKACNALLLKVNQIGTVTESIQAALD 408
Query: 419 AKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQIL 264
+K GWG MVSHRSGETED FIADL VGL++GQIKTGAPCRSERLAKYNQI+
Sbjct: 409 SKAAGWGVMVSHRSGETEDNFIADLAVGLASGQIKTGAPCRSERLAKYNQIV 460
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 208 bits (507), Expect = 5e-54
Identities = 108/196 (55%), Positives = 135/196 (68%), Gaps = 4/196 (2%)
Frame = -3
Query: 776 LGMDVAAXEFF--KDGKYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPMVSIEDPFDQ 603
+GMDVAA EF+ KD YDL+FK +++ +S + L +VY F+ ++P+VSIEDPFDQ
Sbjct: 249 IGMDVAASEFYNDKDKTYDLNFKEENNDGSQKISGDSLKNVYKSFVSEYPIVSIEDPFDQ 308
Query: 602 DDWSAWANLTGRT--PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDA 429
DDW +A +T +QIVGDDL VTNP R+A A+++K+CN LLLKVNQIGSVTESI+A
Sbjct: 309 DDWEHYAKMTAEIGEQVQIVGDDLLVTNPTRVAKAIQEKSCNALLLKVNQIGSVTESIEA 368
Query: 428 HLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEE 249
++K+ GWG M SHRSGETEDTFIADL VGL+T +LRIEEE
Sbjct: 369 VKMSKRAGWGVMTSHRSGETEDTFIADLAVGLAT-------------------LLRIEEE 409
Query: 248 LGVNAKYAGKNFRRPV 201
LG A YAG FR PV
Sbjct: 410 LGAAAVYAGAKFRAPV 425
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 198 bits (484), Expect = 3e-51
Identities = 90/175 (51%), Positives = 124/175 (70%)
Frame = -3
Query: 734 KYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPMVSIEDPFDQDDWSAWANLTGRTPIQ 555
KYD++FK + + + +++ L ++Y ++P+VSIE PFD+DDW T Q
Sbjct: 305 KYDMEFKFAEKSGQGFKTADDLIEIYSQLCSEYPLVSIEQPFDKDDWEHSKKFTTLELCQ 364
Query: 554 IVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSG 375
+VGDDL +++P+RI AV + CN L+LK NQ+G+VTE+I+ AK WG MVSHRSG
Sbjct: 365 VVGDDLLMSDPERIKRAVNEYTCNALVLKANQVGTVTEAIEVVRQAKDAHWGVMVSHRSG 424
Query: 374 ETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFR 210
+T+D+FIADL VG + GQIK GAPCR E L+KYNQ+LRIEEELG + YAG+N+R
Sbjct: 425 DTDDSFIADLAVGAAAGQIKAGAPCRGECLSKYNQLLRIEEELGSDGVYAGENWR 479
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 192 bits (469), Expect = 2e-49
Identities = 109/209 (52%), Positives = 135/209 (64%), Gaps = 17/209 (8%)
Frame = -3
Query: 776 LGMDVAAXEFF-KDGKYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPMVSIEDPFDQD 600
+GMDVAA EF+ +D YDL+FK +++ +S + L +VY F+ ++P+VSIEDPFDQD
Sbjct: 214 IGMDVAASEFYTEDQTYDLNFKEENNDGSQKISGDSLKNVYKSFVSEYPIVSIEDPFDQD 273
Query: 599 DWSAWANLTGRT--PIQIVGDDLTVTNP--------------KRIATAVEKKACNCLLLK 468
DW +A +T +QIVGDDL VTNP +R+A A++ KACN LLLK
Sbjct: 274 DWVHYAKMTEEIGDQVQIVGDDLLVTNPTFPCWLQYSNQFDLQRVAKAIKDKACNALLLK 333
Query: 467 VNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSER 288
VNQIGSVTESI+A ++K+ GWG M SHRSGETEDTFIADL VGLST
Sbjct: 334 VNQIGSVTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGLST------------- 380
Query: 287 LAKYNQILRIEEELGVNAKYAGKNFRRPV 201
+LRIEEELG A YAG FR PV
Sbjct: 381 ------LLRIEEELGAAAVYAGAKFRAPV 403
>06_03_0067 -
16167420-16167845,16168291-16168406,16168634-16168871,
16168903-16169033,16169100-16169289
Length = 366
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -3
Query: 554 IVGDDLTVTNPKRIATAVEKKACNCLLLKVNQ--IGSVTESIDAHLLAKKNGWGTMVSHR 381
+VGDDL PKR A ++ C ++ +Q IG + HL+A ++ V
Sbjct: 215 VVGDDLDNAVPKRDARFTNRRWC----VRDSQIVIGGAGMFVFQHLIATQSPATAAVMAG 270
Query: 380 SGETEDTFIADLVVGL 333
T+D A +VG+
Sbjct: 271 ESSTDDAAAAYTLVGI 286
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -1
Query: 262 ALKRNLVSTPNTPGRTSVDRSKNSLKKT*NSVFLSYPHFDSNKKSSLDY 116
ALKR + T G S+DRS +SLK + V S P+ +S SS Y
Sbjct: 515 ALKRPM---GKTDGNISLDRSNSSLKGSLYRVNESNPNMESTGASSHQY 560
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,538,529
Number of Sequences: 37544
Number of extensions: 461060
Number of successful extensions: 1043
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -