Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_H04
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    48   1e-06
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    29   0.37 
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    27   2.0  
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi...    26   4.5  
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos...    25   7.9  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   7.9  

>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
 Frame = -1

Query: 575 AFISHMGTXTMVGHYVCHILHE----GRWVIFNDNKV--ALSENPPKDLGYLYLYERL 420
           A ISH G+    GHYV  I  E     +WV+FND KV    S    K  GY+YL+ERL
Sbjct: 717 AIISHKGSSAHAGHYVAFIRKEIDGKQQWVLFNDEKVLQVASLEEAKTTGYVYLFERL 774


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 575 AFISHMGTXTMVGHYVCHILHEGRWVIFNDNKVALS 468
           + I+H G+ T  GHY+C+ L +  W   ND+ +  S
Sbjct: 290 SLITHSGSVTY-GHYLCYRLQDDIWWKANDSLITKS 324


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -1

Query: 569 ISHMGTXTMVGHYVCHILHEGRWVIFNDNKV 477
           + H GT    GHY+ +  ++ +W + +D  +
Sbjct: 385 VCHKGTLD-TGHYIAYTYYQNQWFLLDDTTI 414



 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 39  LMDFLMSFNDILNYQVTYIVFISKTNINYYCFSCKGKP*GKKLSF 173
           LMD  +  N+    Q     F+SK  + Y C SC  K   K+L F
Sbjct: 288 LMDISLDINEP-TLQGCLERFVSKEKVQYSCHSCGSKNAIKQLVF 331


>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
           Bub3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +1

Query: 307 FTK*IIPNFVIFVKSLTFSNSLTSQYVFGCIYQ*L*NHSLSYKYK*PRSLGGFSERATLL 486
           F+K ++ N    + S+ FS S+ ++ + GC    L ++ +S     P  LG +   + +L
Sbjct: 3   FSKTLLKNSKDGISSVIFSPSVKNELIAGCWDGSLLHYQISEN---PELLGKYDLSSPIL 59

Query: 487 SLNMT 501
           SL  T
Sbjct: 60  SLEYT 64


>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 499 SYSTTIRLLSQRIRPKILVIYIYMRGYDFRVIDIYNQ 389
           S +++I LL Q    KIL  YI ++  ++RV   +NQ
Sbjct: 199 SLNSSIHLLDQETG-KILKSYIGLKNMEYRVRSSFNQ 234


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 503 WVIFNDNKVALSENPPKDLGYLYLYERL 420
           W+  N ++V   +N P D  Y+ L  RL
Sbjct: 658 WIHLNPDQVVYEKNDPSDCVYVVLNGRL 685


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,586
Number of Sequences: 5004
Number of extensions: 41029
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)