Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_H04
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88180-7|AAB42297.2|  789|Caenorhabditis elegans Hypothetical pr...    79   2e-15
AL132902-8|CAC14423.2|  699|Caenorhabditis elegans Hypothetical ...    30   1.0  
AF326787-1|AAK38268.1|  417|Caenorhabditis elegans CLN-3.3 protein.    30   1.0  
AF078788-5|AAC26960.2|  417|Caenorhabditis elegans Human cln (ne...    30   1.0  
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       29   1.8  
U80836-3|ABA54428.1|  100|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z79601-1|CAB01885.2|  716|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear recep...    28   5.5  
AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormo...    28   5.5  
Z74033-4|CAA98471.2|  822|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AB095019-1|BAC22611.1|  822|Caenorhabditis elegans ubiquitin-spe...    27   9.5  

>U88180-7|AAB42297.2|  789|Caenorhabditis elegans Hypothetical
           protein T27A3.2 protein.
          Length = 789

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 32/50 (64%), Positives = 41/50 (82%)
 Frame = -1

Query: 569 ISHMGTXTMVGHYVCHILHEGRWVIFNDNKVALSENPPKDLGYLYLYERL 420
           ISHMG+    GHYV H+L EG+WV+FND KVALS++PPK L Y+YLY+R+
Sbjct: 739 ISHMGSRPDSGHYVAHMLKEGKWVLFNDEKVALSQDPPKKLAYVYLYKRI 788


>AL132902-8|CAC14423.2|  699|Caenorhabditis elegans Hypothetical
           protein Y71A12B.9 protein.
          Length = 699

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 575 AFISHMGTXTMVGHYVCHILHEGRWVIFNDNKV-ALSE-NPPKDLGYLYLYERL 420
           + I H+G     GHY+      GRW  F+D  V  + E +  K   Y+ LY ++
Sbjct: 641 SIIVHIGYGCGSGHYIAFGKRNGRWFQFDDTVVKGVDEAHVSKQKAYVLLYTKI 694


>AF326787-1|AAK38268.1|  417|Caenorhabditis elegans CLN-3.3 protein.
          Length = 417

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = +1

Query: 319 IIPNFVIFVKSLTFSNSLTSQYVFGCIYQ*L*NHSLSYKYK*PRSLGGFSERATLLSLNM 498
           +IP  +++V     +  +T Q VF C +    N SL  +Y+  + L  F    +  S+ +
Sbjct: 256 MIPLAIVYVGEYMINQGMTQQIVFDCAHG--FNLSLHSQYRWYQVLYQFGVFVSRSSIRL 313

Query: 499 THLPSWSM 522
             LP W +
Sbjct: 314 VELPMWML 321


>AF078788-5|AAC26960.2|  417|Caenorhabditis elegans Human cln
           (neuronal ceroid lipofuscinosis)related protein 3.3
           protein.
          Length = 417

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = +1

Query: 319 IIPNFVIFVKSLTFSNSLTSQYVFGCIYQ*L*NHSLSYKYK*PRSLGGFSERATLLSLNM 498
           +IP  +++V     +  +T Q VF C +    N SL  +Y+  + L  F    +  S+ +
Sbjct: 256 MIPLAIVYVGEYMINQGMTQQIVFDCAHG--FNLSLHSQYRWYQVLYQFGVFVSRSSIRL 313

Query: 499 THLPSWSM 522
             LP W +
Sbjct: 314 VELPMWML 321


>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical
           protein C25G4.5 protein.
          Length = 1263

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -2

Query: 511 KEDGSYSTTIRLL--SQRIRPKILVIYIYMRGYDFRVIDIYNQIRIGSLDCLK 359
           ++DG  ST +R +  +++IRP  +V    M      + DI N+ ++G L+C +
Sbjct: 22  EDDGFRSTPLRKVRGTKKIRPADVVPETIMTKIGAHIDDIVNKKKVGELNCFE 74


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -2

Query: 511 KEDGSYSTTIRLL--SQRIRPKILVIYIYMRGYDFRVIDIYNQIRIGSLDCLK 359
           ++DG  ST +R +  +++IRP  +V    M      + DI N+ ++G L+C +
Sbjct: 22  EDDGFRSTPLRKVRGTKKIRPADVVPETIMTKIGAHIDDIVNKKKVGELNCFE 74


>U80836-3|ABA54428.1|  100|Caenorhabditis elegans Hypothetical
           protein B0432.14 protein.
          Length = 100

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 527 CHILHEGRWVIFNDNK 480
           CH+ H G W+ FND K
Sbjct: 18  CHVAHAGTWLSFNDFK 33


>Z79601-1|CAB01885.2|  716|Caenorhabditis elegans Hypothetical
           protein K09A9.4 protein.
          Length = 716

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -1

Query: 572 FISHMGTXTMVGHYVCHILHE--GRWVIFNDNKVALSE--NPPKDLGYLYLYER 423
           F+ H G     GHYV +  HE   +W  F+D  V   +     K   Y+ +Y +
Sbjct: 494 FVVHEGRSLEFGHYVSYCRHEQDNQWYKFDDMVVTRCDATQVAKSQPYILMYRK 547


>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical
           protein T05H10.1 protein.
          Length = 1326

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -1

Query: 539 GHYVCHI--LHEGRWVIFNDNKV 477
           GHY  +I  L + RW +FND +V
Sbjct: 419 GHYFAYIKNLDQDRWYVFNDTRV 441


>AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear receptor
           NHR-121 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/27 (44%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = -2

Query: 475 LSQRIRPKILVIYIYMRGY-DFRVIDI 398
           + + IRP+ILVIY ++RG+  F +++I
Sbjct: 241 IQKHIRPQILVIYEWLRGWRHFELLNI 267


>AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 121 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/27 (44%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = -2

Query: 475 LSQRIRPKILVIYIYMRGY-DFRVIDI 398
           + + IRP+ILVIY ++RG+  F +++I
Sbjct: 241 IQKHIRPQILVIYEWLRGWRHFELLNI 267


>Z74033-4|CAA98471.2|  822|Caenorhabditis elegans Hypothetical
           protein F38B7.5 protein.
          Length = 822

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
 Frame = -1

Query: 575 AFISHMGTXTMVGHYVCH---ILHEGRWV-IFNDNKVALSENPPKDL----GYLYLYE 426
           A + H+G     GHYV +   +     W+   +DN  A+S+N   +     GYL  YE
Sbjct: 763 AVVCHLGDSPNKGHYVAYTKELYKNSSWLRCSDDNIYAVSKNDVSEAIRSSGYLMFYE 820


>AB095019-1|BAC22611.1|  822|Caenorhabditis elegans
           ubiquitin-specific protease protein.
          Length = 822

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
 Frame = -1

Query: 575 AFISHMGTXTMVGHYVCH---ILHEGRWV-IFNDNKVALSENPPKDL----GYLYLYE 426
           A + H+G     GHYV +   +     W+   +DN  A+S+N   +     GYL  YE
Sbjct: 763 AVVCHLGDSPNKGHYVAYTKELYKNSSWLRCSDDNIYAVSKNDVSEAIRSSGYLMFYE 820


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,684,687
Number of Sequences: 27780
Number of extensions: 215540
Number of successful extensions: 461
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)