Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_H03
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   1.8  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    27   2.4  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    27   3.2  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    26   5.6  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   5.6  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    25   7.5  
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    25   9.9  

>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 70  FISXIPCSSKKSWSIPPSLXKQTHXSS 150
           +I  +P S++ +WS P  L  Q H SS
Sbjct: 90  YIINVPFSTESAWSSPSGLYLQRHRSS 116


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 332 LARKLGLILHSVTLH-FGCVIKELISGIPRNCGRNQS 225
           L  + G   HSV L+ FGC++ E+ S  P   GRN++
Sbjct: 203 LLLRSGSYNHSVDLYAFGCIVFEIYSLKPLFPGRNET 239


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 287 FGCVIKELISGIPRNCGRNQS 225
           FGC++ EL +G+P   G N++
Sbjct: 704 FGCILAELFTGVPLFPGGNET 724


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 594 VLPDKLIFVAANT*ILSHKN 653
           V+PDKL  ++ NT  LS+KN
Sbjct: 221 VIPDKLAAISINTLYLSNKN 240


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 321 TWLNITFSYVALWMCHQGINFWY 253
           TWL+   ++  +W+ H  + FWY
Sbjct: 416 TWLHFLHNFSRIWILHISV-FWY 437


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 482 LCLSQSTLWAHSEDCTSQIVICRYSFYITYKIFRIENNR 366
           LC  QST+  H+     Q   CR+  Y T  + R+EN +
Sbjct: 320 LCSFQSTILKHA----LQFPNCRHVTYSTCSVHRLENEQ 354


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 323 KLGLILHSVTLHFGCVIKELISGIPRNCGRN 231
           KLGL+   +  +FG ++ E +SG P N   N
Sbjct: 131 KLGLVGTYLGDYFGFLLPERVSGFPFNVNDN 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,827
Number of Sequences: 5004
Number of extensions: 54382
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)