Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_H03
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0487 - 25585229-25585540,25585627-25585745,25586029-255861...    29   2.5  
02_05_0668 + 30749474-30750007,30750818-30751403,30751405-307524...    29   3.3  
08_02_0339 + 15968610-15969227,15969304-15969708,15969817-15969981     28   5.9  
11_01_0302 + 2261489-2261738,2261917-2262064,2262124-2262205,226...    28   7.7  

>04_04_0487 -
           25585229-25585540,25585627-25585745,25586029-25586194,
           25586295-25586427,25586527-25586618,25586739-25586925,
           25587183-25587271,25587318-25587379,25587462-25587567,
           25587754-25588052,25588181-25588288,25588369-25588439,
           25588792-25588871
          Length = 607

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 19  SHCRLSTHRFLLLPPNHFISXIPCSSKKSWSIPPSLXKQT 138
           S CR     F++L P+H    +PC   KS +   SL + +
Sbjct: 328 SGCRWDDENFVMLCPSHSSKKLPCERSKSKNKKTSLQRSS 367


>02_05_0668 +
           30749474-30750007,30750818-30751403,30751405-30752497,
           30753105-30753255,30754055-30754870
          Length = 1059

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 308 LHSVTLHFGCVIKELI 261
           L  VTLHFGC++KE I
Sbjct: 101 LEDVTLHFGCLLKETI 116


>08_02_0339 + 15968610-15969227,15969304-15969708,15969817-15969981
          Length = 395

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 456 GTFGRLHIPNCHLSVFFLYHLQN-IPYRKQSPISLDTAPSPVAGT*TWLNITFSYVALWM 280
           G++ R H+P  HL    +Y ++N IP+     I+  T   P AG    +    SY+A +M
Sbjct: 135 GSWQRQHVPPQHLEHDIIYLVENQIPFFILEKINEITGLIPTAGGSQLVRHFCSYIAEYM 194


>11_01_0302 +
           2261489-2261738,2261917-2262064,2262124-2262205,
           2262501-2262566,2262609-2262686,2262794-2262808,
           2263618-2263764
          Length = 261

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 314 LILHSVTLHFGCVIKELISGIPRNCGRNQS*SQTKLTI 201
           L +H+++LH G  I+  +S +  NCG N   + ++L I
Sbjct: 92  LKIHAISLHPGASIEHQLSYVFANCGCNSIFNVSELAI 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,847,867
Number of Sequences: 37544
Number of extensions: 358273
Number of successful extensions: 964
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)