Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_H03
         (670 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC093879-1|AAH93879.1|  818|Homo sapiens protocadherin gamma sub...    30   8.6  
BC093877-1|AAH93877.1|  818|Homo sapiens protocadherin gamma sub...    30   8.6  
AK131077-1|BAC85127.1| 1544|Homo sapiens FLJ00266 protein protein.     30   8.6  
AF152521-1|AAD43781.1|  818|Homo sapiens protocadherin gamma B5 ...    30   8.6  
AB046784-1|BAB13390.3| 2432|Homo sapiens KIAA1564 protein protein.     30   8.6  

>BC093879-1|AAH93879.1|  818|Homo sapiens protocadherin gamma
           subfamily B, 5 protein.
          Length = 818

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 499 ILSASSSVCLNQLCGHIRKIAHPKL-SFVGILSIS-PTKYSV 380
           IL   SS  L  LC      +HP+L SF+ + S S PT++SV
Sbjct: 775 ILCGDSSGALFPLCNSSESTSHPELVSFIYVYSFSLPTQFSV 816


>BC093877-1|AAH93877.1|  818|Homo sapiens protocadherin gamma
           subfamily B, 5 protein.
          Length = 818

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 499 ILSASSSVCLNQLCGHIRKIAHPKL-SFVGILSIS-PTKYSV 380
           IL   SS  L  LC      +HP+L SF+ + S S PT++SV
Sbjct: 775 ILCGDSSGALFPLCNSSESTSHPELVSFIYVYSFSLPTQFSV 816


>AK131077-1|BAC85127.1| 1544|Homo sapiens FLJ00266 protein protein.
          Length = 1544

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 549 HRAHVQALIRTCGKSVLPDKLI 614
           H  H+QA++R+ GK VL DKL+
Sbjct: 84  HDFHLQAMVRSAGKLVLIDKLL 105


>AF152521-1|AAD43781.1|  818|Homo sapiens protocadherin gamma B5
           short form protein protein.
          Length = 818

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 499 ILSASSSVCLNQLCGHIRKIAHPKL-SFVGILSIS-PTKYSV 380
           IL   SS  L  LC      +HP+L SF+ + S S PT++SV
Sbjct: 775 ILCGDSSGALFPLCNSSESTSHPELVSFIYVYSFSLPTQFSV 816


>AB046784-1|BAB13390.3| 2432|Homo sapiens KIAA1564 protein protein.
          Length = 2432

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 549  HRAHVQALIRTCGKSVLPDKLI 614
            H  H+QA++R+ GK VL DKL+
Sbjct: 972  HDFHLQAMVRSAGKLVLIDKLL 993


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,344,139
Number of Sequences: 237096
Number of extensions: 1946758
Number of successful extensions: 4467
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4467
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)