Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_H02
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    28   1.8  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    27   4.3  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    27   4.3  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   4.3  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   9.8  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   9.8  

>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 207 HEYQFLLCIADCSTFTSRNINISSCRAIKTSHFH 308
           HEY ++L  +D  T    N    +C AI T H H
Sbjct: 105 HEYPWILSCSDDQTIRIWNWQSRNCIAILTGHSH 138


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 42  FCINKFIIESTQRSTTPFMFHRTTPTHFQRCC 137
           F +N FI+        PF+   T+    +RCC
Sbjct: 343 FHVNHFIVSQVNFHIVPFIMDPTSHNWVERCC 374


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 329 YGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQEKL 216
           +   + N  +  F      +VN+ GG GG+V D  E L
Sbjct: 134 FRSSNQNSSLKSFQSVPDSNVNVFGGFGGSVVDNNELL 171


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 335 FRHCSCHLHRHPTYSH*QTLVPFWERQHCSHLRLVSSQIRLLQNQRDLLPVD 490
           FRH    LH HP + H  +++P        H++LV  +++ L +   LL  D
Sbjct: 73  FRHGYWKLHPHPHHQH-DSIIPASWIHDTPHMKLVFHRLQNLPDGDLLLEND 123


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 475 VPLVLQKTNL*RYQTKMRTMLSLPKWNQSLLMRVCG 368
           VPL+ QKT +     K+ ++  LPK N+  +  +CG
Sbjct: 391 VPLI-QKTKIAVVVRKIFSLAGLPKENEDEVKSICG 425


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 149 TSGHTTSLKVRWCCSMKHKGCRASLSTFNNEL-IYT 45
           TS  T    + + CS+  + C  SL TFN  L +YT
Sbjct: 205 TSLETLPTSIYFDCSISVRDCHDSLVTFNRVLPLYT 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,451
Number of Sequences: 5004
Number of extensions: 55486
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)