Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_H02
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72514-9|CAA96680.3|  449|Caenorhabditis elegans Hypothetical pr...    33   0.25 
Z68001-3|CAO78709.1|  449|Caenorhabditis elegans Hypothetical pr...    33   0.25 
Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    31   1.00 
U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone...    29   5.3  
AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear recep...    29   5.3  
AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear recep...    29   5.3  

>Z72514-9|CAA96680.3|  449|Caenorhabditis elegans Hypothetical
           protein T10B10.8 protein.
          Length = 449

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 19/84 (22%), Positives = 37/84 (44%)
 Frame = +3

Query: 267 NISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRH 446
           +  +C ++ T++  + + L VI  VI R +  VI    ++ +  H  S SI L  +W+  
Sbjct: 273 DFDTCVSLATTNCLLIVSLLVIKLVIERFVVNVISTRSVSSIETHLVSQSIYLFSMWFAL 332

Query: 447 KFVFCRTRGTCFQWIYAFSFRWST 518
           K      +       +  +  W+T
Sbjct: 333 KLAHPSAQPVAAWVFFTSNLAWTT 356


>Z68001-3|CAO78709.1|  449|Caenorhabditis elegans Hypothetical
           protein T10B10.8 protein.
          Length = 449

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 19/84 (22%), Positives = 37/84 (44%)
 Frame = +3

Query: 267 NISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRH 446
           +  +C ++ T++  + + L VI  VI R +  VI    ++ +  H  S SI L  +W+  
Sbjct: 273 DFDTCVSLATTNCLLIVSLLVIKLVIERFVVNVISTRSVSSIETHLVSQSIYLFSMWFAL 332

Query: 447 KFVFCRTRGTCFQWIYAFSFRWST 518
           K      +       +  +  W+T
Sbjct: 333 KLAHPSAQPVAAWVFFTSNLAWTT 356


>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
 Frame = +3

Query: 219 FLLCI-ADCSTFTSRNINISSCR---AIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLIN 386
           F  CI   CS  T   I + S R   + KT  +HI++ +  +   +++A+F+V+P T I 
Sbjct: 601 FFACIFVVCSLATI--IVVQSARDTMSYKTVKYHIQVTVLFLCSCVIQALFVVLPVTHI- 657

Query: 387 KLWFHFGSDSIVLIFVWYRHKFVFCRTRGTCFQWIYAFS 503
            L  +F S  I      Y +  +    +GT F   Y  S
Sbjct: 658 VLCVYFDSFKIYTKDYIY-YSLLTQAHQGTAFTLFYVLS 695


>U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical
           protein F01G12.1 protein.
          Length = 178

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 372 HTLINKLWFHFGSDSIVLIFVW-YRHKFVFCRTRGTCF-QWIYA 497
           HT+  K+WFH+G D +VL   W    K       G  F  WI+A
Sbjct: 116 HTM--KMWFHWGFDEVVLFDFWRIDDKNALAVILGAGFGHWIFA 157


>U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 107 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 105 RTTPTHFQRCCVTTCAFMVTISTLQNDRLAES*CHEYQFLLC 230
           R    HF   C T+  F  T+ TL     AE  C E +  LC
Sbjct: 297 RELSAHFNETCTTSSRFFETLDTLNIIEKAERKCQE-EIALC 337


>AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 105 RTTPTHFQRCCVTTCAFMVTISTLQNDRLAES*CHEYQFLLC 230
           R    HF   C T+  F  T+ TL     AE  C E +  LC
Sbjct: 297 RELSAHFNETCTTSSRFFETLDTLNIIEKAERKCQE-EIALC 337


>AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 105 RTTPTHFQRCCVTTCAFMVTISTLQNDRLAES*CHEYQFLLC 230
           R    HF   C T+  F  T+ TL     AE  C E +  LC
Sbjct: 297 RELSAHFNETCTTSSRFFETLDTLNIIEKAERKCQE-EIALC 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,379,219
Number of Sequences: 27780
Number of extensions: 321879
Number of successful extensions: 856
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)