Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_G23
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0016 - 15444543-15444901,15445091-15445113,15445205-154456...    28   5.9  
05_03_0685 + 16992899-16993570                                         28   5.9  
04_03_0140 - 11736496-11736702,11737950-11738456                       28   5.9  
06_03_1176 - 28172230-28172547,28172691-28172849,28172962-28174194     27   7.7  
01_05_0368 + 21434398-21434415,21434521-21434553,21437074-21437391     27   7.7  

>06_03_0016 -
           15444543-15444901,15445091-15445113,15445205-15445618,
           15445707-15445726
          Length = 271

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -3

Query: 556 GAASRRSQSPLDTAYY-GLDHRGTPVGASDDESNSRSATATPHSIVQMPDEPANMYENTS 380
           GA      +  D+A   G +  G   GA D  S    + ATP +      +P N  ++ +
Sbjct: 198 GAGDGSMSAAADSAQLSGGNAAGAEGGAGDGVSGQGDSAATPGTSTFSSAQPTNSTQSPT 257

Query: 379 XKRTDGLQGSQAPR 338
            +RTD  QG +  R
Sbjct: 258 WERTD-RQGRRGHR 270


>05_03_0685 + 16992899-16993570
          Length = 223

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = -2

Query: 200 GRRYXQALLDTAFH-HHXCPCCSAGTQPP 117
           G R+    +D  F  H  CP C AG  PP
Sbjct: 156 GHRFHARCVDMWFQLHSTCPLCRAGVLPP 184


>04_03_0140 - 11736496-11736702,11737950-11738456
          Length = 237

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 197 GPSHSRRWERVDPPSANPC 253
           G  H RRW+ V PP   PC
Sbjct: 16  GGVHHRRWDGVVPPECAPC 34


>06_03_1176 - 28172230-28172547,28172691-28172849,28172962-28174194
          Length = 569

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 424 VQMPDEPANMYENTSXKRTDGLQGSQAPRXSFKAVEISKQTPNYDHDXNK 275
           VQ+P+      ENTS +  +G Q     +  F+ +++ K T N+ +D N+
Sbjct: 463 VQLPERDCTYTENTSSENVEGEQ-----QDGFEKLDVVKMT-NFKYDWNE 506


>01_05_0368 + 21434398-21434415,21434521-21434553,21437074-21437391
          Length = 122

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -3

Query: 499 HRGTPVGASDDESNSRSATATPHSIVQMPDEPANMYENTSXKRTDGLQGSQAPRXS 332
           +RG  +G  D ++NS    +TP +    P+ PA    N     T G     A + S
Sbjct: 48  YRGEIIGFPDVQANSSQPASTPSTAPSTPN-PATPQTNALATGTSGTPSGSAAQSS 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,839,446
Number of Sequences: 37544
Number of extensions: 239730
Number of successful extensions: 692
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)