Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_G21
(846 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X99600-1|CAA67914.1| 91|Caenorhabditis elegans ubiquitin-like ... 95 7e-20
U94830-1|AAB67608.1| 91|Caenorhabditis elegans ubiquitin-like ... 95 7e-20
AF043701-6|AAK18969.1| 91|Caenorhabditis elegans Sumo (ubiquit... 95 7e-20
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 34 0.15
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 34 0.15
AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical ... 32 0.59
Z83218-5|CAB05691.1| 352|Caenorhabditis elegans Hypothetical pr... 29 4.2
U50311-5|AAX22295.1| 299|Caenorhabditis elegans Serpentine rece... 29 4.2
>X99600-1|CAA67914.1| 91|Caenorhabditis elegans ubiquitin-like
protein protein.
Length = 91
Score = 94.7 bits (225), Expect = 7e-20
Identities = 45/90 (50%), Positives = 66/90 (73%), Gaps = 3/90 (3%)
Frame = -2
Query: 665 MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 495
MAD+ + G+N E+I +KV+GQD+ V F++K T + KL +Y DR G+++ +RF FD
Sbjct: 1 MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60
Query: 494 GQPINENDTPTSLEMEEGDTIEVYQQQTGG 405
G+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 61 GRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90
>U94830-1|AAB67608.1| 91|Caenorhabditis elegans ubiquitin-like
protein protein.
Length = 91
Score = 94.7 bits (225), Expect = 7e-20
Identities = 45/90 (50%), Positives = 66/90 (73%), Gaps = 3/90 (3%)
Frame = -2
Query: 665 MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 495
MAD+ + G+N E+I +KV+GQD+ V F++K T + KL +Y DR G+++ +RF FD
Sbjct: 1 MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60
Query: 494 GQPINENDTPTSLEMEEGDTIEVYQQQTGG 405
G+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 61 GRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90
>AF043701-6|AAK18969.1| 91|Caenorhabditis elegans Sumo
(ubiquitin-related) homologprotein 1 protein.
Length = 91
Score = 94.7 bits (225), Expect = 7e-20
Identities = 45/90 (50%), Positives = 66/90 (73%), Gaps = 3/90 (3%)
Frame = -2
Query: 665 MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 495
MAD+ + G+N E+I +KV+GQD+ V F++K T + KL +Y DR G+++ +RF FD
Sbjct: 1 MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60
Query: 494 GQPINENDTPTSLEMEEGDTIEVYQQQTGG 405
G+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 61 GRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = -2
Query: 614 GQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEMEEGDT 435
G D +IVQF I+ P+ +L DR G+ + + DG + +N + + +
Sbjct: 583 GMDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTA 642
Query: 434 IEVYQQQTGG 405
I + ++ GG
Sbjct: 643 IYLQVKERGG 652
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = -2
Query: 614 GQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEMEEGDT 435
G D +IVQF I+ P+ +L DR G+ + + DG + +N + + +
Sbjct: 583 GMDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTA 642
Query: 434 IEVYQQQTGG 405
I + ++ GG
Sbjct: 643 IYLQVKERGG 652
>AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical
protein H04J21.1 protein.
Length = 1032
Score = 31.9 bits (69), Expect = 0.59
Identities = 14/69 (20%), Positives = 35/69 (50%)
Frame = -2
Query: 611 QDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEMEEGDTI 432
Q ++ ++++ L +L ++ G+ + +R ++G+PI+ DTP SL +
Sbjct: 930 QQLEVLHSHVEENEKLGRLDKRISEKIGVDAKFIRVTYNGRPIDPMDTPYSLGLSHTANF 989
Query: 431 EVYQQQTGG 405
++ + + G
Sbjct: 990 HMFFKPSPG 998
>Z83218-5|CAB05691.1| 352|Caenorhabditis elegans Hypothetical
protein C31A11.9 protein.
Length = 352
Score = 29.1 bits (62), Expect = 4.2
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +3
Query: 543 ISIHQFPERCVFLYFELY-NCVILT*YFQINVFVFSLLFISHFEINVVLETINTKL*IDK 719
I+ H E + Y L+ +C +T Y ++V V + ++++T +K IDK
Sbjct: 30 ITKHSPKEIGDYKYLMLFISCFEIT-YSLLDVLVQPMFHSFQATFVLIVDTSMSK--IDK 86
Query: 720 LIWYLFSQTNA*MTACAMAW*SIHLKFPY 806
L W F+ A A MA SIH + Y
Sbjct: 87 LFWQTFAFIYADFFASTMAIFSIHFAYRY 115
>U50311-5|AAX22295.1| 299|Caenorhabditis elegans Serpentine
receptor, class sx protein34, isoform c protein.
Length = 299
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +2
Query: 116 FVDVSTKHITMELLKLPTAFGIL--IIYLTTSYLRRIMLCVARLCYYVSQNYFL-TLLQI 286
F D+ T H LL +PT G++ ++ + R C Y +Y L T LQ+
Sbjct: 67 FFDIQTSHFVCTLLNIPTLIGVISGSCWILAMGIDRFFACKWPASYRSLVSYSLYTFLQL 126
Query: 287 QMMFL 301
F+
Sbjct: 127 VFPFI 131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,492,702
Number of Sequences: 27780
Number of extensions: 373685
Number of successful extensions: 846
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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