Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_G20
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    25   5.5  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    24   7.2  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    24   7.2  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    24   9.6  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    24   9.6  

>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 221 VESSTDQSIKWPSSASLLASFGXVFR*QGSS 129
           +ESS+      PS++ LL SF   F   GSS
Sbjct: 327 IESSSSPLRSGPSTSGLLDSFTSAFHTSGSS 357


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 162 IWXGVPMTGFFIGKFXDDQETXRMTSF 82
           +W G  M  FF   + D++E  ++ SF
Sbjct: 277 VWEGRNMYSFFAFMYVDEKEWEKLKSF 303


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 129 IGKFXDDQETXRMTSFRDKXALFGGRVKEG 40
           IG+F   +E  + T+  D   ++GGR  +G
Sbjct: 291 IGRFPGPREGHQATTIDDTVYIYGGRDNKG 320


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 176 MPKMAILYFDLLSFPLASVVPVKK 247
           + K+AI +FD     +A  +PVKK
Sbjct: 25  LSKLAISFFDQKKNKMADSIPVKK 48


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 221 LASVVPVKKNXRNAYGGKDYAHKIP 295
           L  ++P  ++    YGG + A K+P
Sbjct: 636 LEGIIPALESSHAVYGGMELAKKLP 660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,045
Number of Sequences: 5004
Number of extensions: 30193
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)