Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_G20
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285...    30   0.56 
08_02_0350 + 16123139-16124041                                         28   2.2  
08_02_1097 + 24284494-24284496,24284946-24285407,24285476-242864...    28   3.0  
04_04_1377 - 33064906-33065607                                         27   6.9  
01_03_0136 - 12897284-12897399,12897679-12897727,12898563-128986...    26   9.1  

>01_06_0848 +
           32426550-32426613,32427013-32427167,32428470-32428526,
           32428877-32428930,32429349-32429418,32429951-32432034
          Length = 827

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
 Frame = +2

Query: 35  GSPSLTLPPNK---AXLSRKLVILX-VSWSSXNLPMKNPVIGT-PXQM------KRGVMP 181
           GSPS++LP +    A LS  L     VS+ S NLP  NP+    P Q       +  ++P
Sbjct: 242 GSPSMSLPSSSYHMAGLSHGLPYGGSVSFGSPNLPGSNPIQNDWPNQANPYAVDQFNLLP 301

Query: 182 KMAILYFDLLSFPLASVVPVKKNXRNAYGGKDYAHK----IPTQXL*QRHKPVYTNR 340
            M      L + P++S++  ++  R A      +H+    +P     Q H P  T R
Sbjct: 302 NMLQKQISLPNSPMSSLLFSQQQQRLAQVQVQPSHQNYLNLPPHLFYQHHSPELTGR 358


>08_02_0350 + 16123139-16124041
          Length = 300

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +2

Query: 35  GSPSLTL--PPNKAXLSRKLVILXVSWSSXNLPMKNPVIGTPXQMKRGVMPKMAILYFDL 208
           GSPSL     P  +    +  +  VS      P   PV G   ++  GV+  + ++  DL
Sbjct: 165 GSPSLAARRSPMASVSPPRPEVTVVSAPLPLSPCLTPVAGLVDEVPNGVLFDVPMVVLDL 224

Query: 209 LSFPLASVVP 238
             +P+A V+P
Sbjct: 225 DGWPMAHVLP 234


>08_02_1097 +
           24284494-24284496,24284946-24285407,24285476-24286450,
           24286566-24286655,24286760-24287021,24287447-24287472
          Length = 605

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 88  RHPXGFLVIXKFAYEEPCHRNTXPNEARSDAED 186
           RH    +VI +F YE+   R    +E+++DA+D
Sbjct: 178 RHGRNKVVIDEFGYEDLLRRRHTGHESQNDADD 210


>04_04_1377 - 33064906-33065607
          Length = 233

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 317 GVVTXPASESCEHSLSHHKHYXYFS*LEPHSQ 222
           G++  P +   E    HH H+ +   L+PH +
Sbjct: 166 GMMVAPTTHHRERQKHHHHHHHHHPHLQPHGE 197


>01_03_0136 -
           12897284-12897399,12897679-12897727,12898563-12898661,
           12898781-12898886,12899209-12899304,12899394-12899542,
           12899629-12899904,12900229-12900317,12900921-12901013,
           12901110-12901205,12901337-12901444,12901703-12901895,
           12902608-12902639,12902997-12903066
          Length = 523

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 236 PVKKNXRNAYGGKDYA-HKIP--TQXL*QRHKPVYTNRGIYLKSRIIG 370
           P  KN      G+ YA H +P     + +R+K V TN+ I LK  I+G
Sbjct: 182 PQYKNHDFYISGESYAGHYVPQLADVVYERNKHVETNQHINLKGFIVG 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,549,209
Number of Sequences: 37544
Number of extensions: 198562
Number of successful extensions: 315
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)