Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_G19
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    29   0.31 
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   0.71 
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    26   1.6  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   2.2  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   5.0  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   5.0  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    24   6.7  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   8.8  
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    24   8.8  

>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = -2

Query: 216 SHHPECPHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKN 40
           SHHP   +P    C       P + P   PQ+P+H   V   SP     P   P  + N
Sbjct: 136 SHHPPLHNPLPVSCQ------PVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPN 188


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 27.5 bits (58), Expect = 0.71
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 101 TCAVCVGNCGRASGTTCGPTSPSEEHWE 184
           TCA+C+  C +     C   S  E  +E
Sbjct: 83  TCAICIRQCHKCESNVCSMCSKQERTFE 110


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
 Frame = -2

Query: 168 DGEVGPQVVPEARPQLPTHTAQ------VEEASPQATPPPTVD 58
           DG  G    P+ + Q  T +AQ      VE+ +PQ T P  VD
Sbjct: 366 DGIPGKAASPQVQQQQQTSSAQQQQPQRVEQPAPQTTQPTQVD 408


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 124 LRSGLRDHLRPYLPIRRTLGRTRMWALWVVRS 219
           LR+  +  L  +LP RRT G  ++WA + V +
Sbjct: 838 LRNFKQGSLVLFLPTRRTAGNKKVWAAFNVNA 869


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = +2

Query: 5   IVSISIXVSGFQFFIRSGSTVGGGVACGDASSTCAVCVGNCGRASGTTCGPT 160
           +V+    + GF F+  S ST          + TC       G+ +G   GPT
Sbjct: 361 VVANGAYIGGFDFYFTSDSTGPLATTSYSYTKTCTQQFLPFGQGNGGVNGPT 412


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = +2

Query: 5   IVSISIXVSGFQFFIRSGSTVGGGVACGDASSTCAVCVGNCGRASGTTCGPT 160
           +V+    + GF F+  S ST          + TC       G+ +G   GPT
Sbjct: 361 VVANGAYIGGFDFYFTSDSTGPLATTSYSYTKTCTQQFLPFGQGNGGVNGPT 412


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 205 WVVRSHLLPRLPQEASSPVSSY*RQPSSPWAPQLRVLPALV 327
           W V  H+ PRLP+     ++ Y   PSS W+  L +  A++
Sbjct: 516 WNVEEHINPRLPE---GSINDY---PSSFWSDFLHLNRAML 550


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 238 PQEASSPV-SSY*RQPSSPWAPQLRVLPALVVQERQALRIGRPNS 369
           P +   PV S+   QPSSP  P    +PA  +Q  Q+ +  +P+S
Sbjct: 389 PVQPIQPVQSTQYYQPSSPVQPVQNGVPAPPMQPVQSTQYYQPSS 433


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 71  GGVACGDASSTCAVCVGNCGRAS 139
           GG+  G  +  C VCVG  G ++
Sbjct: 134 GGITVGLCNLICGVCVGITGSSA 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,126,735
Number of Sequences: 5004
Number of extensions: 19028
Number of successful extensions: 66
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)