Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_G14
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    58   1e-09
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    37   0.003
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    26   4.7  

>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 25/54 (46%), Positives = 35/54 (64%)
 Frame = -2

Query: 715 GIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNANAVVHALMK 554
           G +++K DT+   VG  + M Y    PI+FVG GQTY+DL+ L+ + VV  LMK
Sbjct: 494 GFIISKVDTVGQLVGVMVGMVYAVRVPIIFVGIGQTYSDLRTLSVDWVVDQLMK 547


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -2

Query: 712 IVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNANAVVHALM 557
           +++TK D    K G A+S    T  PIVF+GTG+   DL+  +  + +  L+
Sbjct: 245 VIITKLDG-HAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFISKLL 295


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -1

Query: 626 RRNGTNVHRFESAERQRCSSRLDEVNL*CCALLLSIINSRFFLSQNRCIRI 474
           ++ G+ +   E  +  R    +    + CC  L+S+  SR F   + C+R+
Sbjct: 316 KKRGSKLISLELTDTARIHVSVINAIVDCCPNLISLNLSRIFYLDDECVRL 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,601
Number of Sequences: 5004
Number of extensions: 53471
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)