Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_G14
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 85 5e-17
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 40 0.002
05_06_0027 - 25029725-25030017,25030097-25030211,25030347-250305... 35 0.074
01_06_0874 + 32646039-32646269,32646351-32646450,32647400-326474... 33 0.30
09_04_0635 - 19143721-19145165,19145255-19145306 29 2.8
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 29 4.9
03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594 28 6.4
>08_02_1023 - 23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 85.0 bits (201), Expect = 5e-17
Identities = 37/54 (68%), Positives = 46/54 (85%)
Frame = -2
Query: 715 GIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNANAVVHALMK 554
GI+LTKFDTIDDKVGAA+SM YI+G P++FVG GQ+YTDLK LN ++V L+K
Sbjct: 997 GILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 1050
>11_01_0334 +
2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = -2
Query: 715 GIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLK 593
G +LTK D D + GAA+S+ ++G+PI FVG G+ DL+
Sbjct: 303 GAILTKLDG-DSRGGAALSVKEVSGKPIKFVGRGERMEDLE 342
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = -2
Query: 715 GIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLK 593
G +LTK D D + GAA+S+ ++G+PI FVG G+ DL+
Sbjct: 741 GAILTKLDG-DSRGGAALSIKEVSGKPIKFVGRGERMEDLE 780
>05_06_0027 -
25029725-25030017,25030097-25030211,25030347-25030504,
25030582-25030682,25030846-25030994,25031089-25031239,
25031329-25031482,25032249-25032321,25032446-25032676
Length = 474
Score = 34.7 bits (76), Expect = 0.074
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -2
Query: 712 IVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNANAVVHALM 557
+++TK D K G A+S T P+VF+GTG+ D + + V L+
Sbjct: 236 VIVTKLDG-HAKGGGALSAVAATKSPVVFIGTGEHMQDFEVFDVKPFVSRLL 286
>01_06_0874 +
32646039-32646269,32646351-32646450,32647400-32647461,
32647503-32647609,32647689-32647839,32647925-32648073,
32648557-32648657,32648730-32648887,32648968-32649015,
32649028-32649142,32649212-32649543
Length = 517
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -2
Query: 712 IVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNANAVVHALM 557
+++TK D K G A+S T P++F+GTG+ + + + V L+
Sbjct: 250 VIVTKMDG-HAKGGGALSAVAATKSPVIFIGTGEHIDEFEVFDVKPFVSRLL 300
>09_04_0635 - 19143721-19145165,19145255-19145306
Length = 498
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 622 GTGQTYTDLKALNANAVVHALMK*TYSAVR 533
GTG TYT++ +AVVHA+ K Y V+
Sbjct: 246 GTGLTYTNMLDEMLDAVVHAMAKLGYGGVK 275
>09_02_0286 -
6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 609 VCPVPTNTIGCPVMYVIDMAAPTL-SSIVSNLVSTXP 716
V P+P GCP++ VID+ + L I+ +L S+ P
Sbjct: 417 VNPLPVLAAGCPLLEVIDLGSNELDGEIMPDLCSSLP 453
>03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594
Length = 323
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/44 (43%), Positives = 22/44 (50%)
Frame = +2
Query: 539 STISSLHQGVNYSVGVQRFQIGVRLSRSDEHYRLPGDVRHRYGG 670
S S+ +G +S G RF R D YR P DVR RYGG
Sbjct: 158 SKFSAGGRGDRFS-GSDRFGDRYMDDRYDGGYREPVDVRDRYGG 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,117,725
Number of Sequences: 37544
Number of extensions: 265596
Number of successful extensions: 505
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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