Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_G13
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    29   0.53 
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    28   1.2  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    27   2.1  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   6.5  
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   6.5  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 554 IIFYYFLITTVDAKRKLRRFKLNILMRQILSFFLGYIFFYY 432
           ++   FL+T V ++ K   FK +IL+   L   LG+ FF Y
Sbjct: 841 VMICVFLLTYVHSEGKSNYFKGSILVLAYLVSMLGFTFFNY 881


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = +2

Query: 92  YLFLVSNFTEEIITVLIWE*FQWRSNFTKRSSKLAFFKINHFVCIYIFDPFGQCKI*LPL 271
           +++ VS+F E +++   +E  QWR  F+K +S      I   +  +     G+ K    L
Sbjct: 138 FIYTVSSFIE-LLSEPYYEVLQWRQKFSKTASAEGLGTIICSLLSFAISVLGRNKAPSSL 196

Query: 272 CPSRL*N*STRISIF 316
            P  L N S +++IF
Sbjct: 197 -PFALGNLSEKVTIF 210


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +3

Query: 144 GNNFNGVVILQKEVVNLLFSKLTILCVYIYLTHSANAKYSFRYVPAAFKTNRLEYRS 314
           GN   GV   ++E  ++LFS  ++L +++        ++SF      FK + L+YR+
Sbjct: 113 GNYIEGVYDSEEEAPHMLFSSSSLLSIFLRKCVVEYEQFSFEQGVQFFK-SFLQYRA 168


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 246 ANAKYSFRYVPAAFKTNRLEYRSLNETIST 335
           A  +YS + V  A K + ++Y  LNE + T
Sbjct: 839 AQLRYSIQNVAHAQKESEVKYNELNEQVKT 868


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 144 GNNFNGVVILQKEVVNLLFSKLTILCV 224
           G  F G  IL+  V N L   LT+LC+
Sbjct: 222 GGYFEGAGILRDVVQNHLLQLLTLLCI 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,389
Number of Sequences: 5004
Number of extensions: 41010
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)