Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_G13
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457740-8|CAM36338.1|  362|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane...    29   2.6  
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     28   6.0  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>CU457740-8|CAM36338.1|  362|Caenorhabditis elegans Hypothetical
           protein C50E10.8 protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 539 FLITTVDAKRKLRRFKLNILMRQILSFFLGYIFFYYTVLH 420
           F I   +  R+     L IL +QIL F LGY F ++ ++H
Sbjct: 154 FFIKNYENTRRTYLLALLILFQQILIFLLGY-FLFFNLIH 192


>Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical
           protein C08B11.4 protein.
          Length = 822

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 204 KLTILCVYIYLTHSANAKYSFRYVPAAFKTNRLEYRSLNETISTYI*NRY 353
           +L I  V + LT  +N+K S++Y  + F +  L+Y   +      + +RY
Sbjct: 6   RLLIFAVLVILTVISNSKSSYKYDGSLFSSKELDYDETDTKAMGSVFSRY 55


>AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane
           protein NRF-6 protein.
          Length = 822

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 204 KLTILCVYIYLTHSANAKYSFRYVPAAFKTNRLEYRSLNETISTYI*NRY 353
           +L I  V + LT  +N+K S++Y  + F +  L+Y   +      + +RY
Sbjct: 6   RLLIFAVLVILTVISNSKSSYKYDGSLFSSKELDYDETDTKAMGSVFSRY 55


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical protein
            K04B12.1 protein.
          Length = 1764

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 183  VVNLLFSKLTILCVYIYLTHSANAKYSFRYVPAAFKTNR 299
            VV  +FSK   +C+Y +LT   N+ Y + Y    ++T++
Sbjct: 1306 VVEKMFSKWMSICLYSHLTPQMNS-YFYLYKALQYQTDK 1343


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 183  VVNLLFSKLTILCVYIYLTHSANAKYSFRYVPAAFKTNR 299
            VV  +FSK   +C+Y +LT   N+ Y + Y    ++T++
Sbjct: 1308 VVEKMFSKWMSICLYSHLTPQMNS-YFYLYKALQYQTDK 1345


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 210 TILCVYIYLTHSANAKYSFRYVPAAFKTNRLEYRSLNETISTY 338
           T+ C Y+ L   A+     +Y P+A K + +E     E+   Y
Sbjct: 705 TVWCDYVALDKDAHEILKSKYTPSALKNHMMESVGYRESFDHY 747


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 210 TILCVYIYLTHSANAKYSFRYVPAAFKTNRLEYRSLNETISTY 338
           T+ C Y+ L   A+     +Y P+A K + +E     E+   Y
Sbjct: 705 TVWCDYVALDKDAHEILKSKYTPSALKNHMMESVGYRESFDHY 747


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,916,785
Number of Sequences: 27780
Number of extensions: 220131
Number of successful extensions: 456
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)