Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_G09
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy...    71   2e-13
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   4.2  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   5.5  
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   5.5  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   9.6  

>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 136

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
 Frame = -2

Query: 262 AEKKAKMADRTNDKEPTWVLQG--KKLLKVREFKGKVYVDIREFYEKNGELLPGKKGISL 89
           A  K    ++ +D E  W L    KK + + EF+G  YV IRE+YEK+G++LPGKKGI+L
Sbjct: 13  ASSKKPKTEKQSDHELHWALNETEKKRITLSEFRGTRYVHIREYYEKDGDMLPGKKGIAL 72

Query: 88  TPEQWRKLXSXGEEVNETV 32
              +W+KL     EV++++
Sbjct: 73  NINEWKKLKQLIHEVDDSL 91


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 445  HINSTLWYCRLSLVRFISY 389
            HINS + YCRL+  R   Y
Sbjct: 1554 HINSWIGYCRLTRTRITGY 1572


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 582  VLNTYWPSFYTRAAFRAEVTLPYRP 656
            V NTYW S+ +     A+  +PY P
Sbjct: 1145 VRNTYWTSYNSAYVQSADAMVPYYP 1169


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 104 FTW*KFTILFIKFSYVYIYFSFEFS 178
           + W K   +F+KFS + + FS  FS
Sbjct: 49  YQWFKHQSVFLKFSLIVLLFSLMFS 73


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 21  HMELTVSLTSSPXDXNFLHCSGVRLIPFLPGKS 119
           H +  + +T  P   NF  CS  R + +  GKS
Sbjct: 617 HQDSIMEVTFQPDTYNFFTCSKDREVRYWDGKS 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,319
Number of Sequences: 5004
Number of extensions: 36063
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)