Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_G09
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.8  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      21   7.8  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 148 IREFYEKNGELLPGKKGISLTPEQWRK-LXSXGEEVNE 38
           I+ F  KN +    ++GI + PE+W+K +   G+ + E
Sbjct: 307 IQFFANKNQKFY--ERGIMMLPERWQKVIDQNGQHITE 342


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 656 RPVRKCYFC 630
           +P+ KCYFC
Sbjct: 422 KPLDKCYFC 430


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 228 MIKSQHGCYRARNY*KSENSKEKYM*T*ENFM 133
           M+ +QH C R  NY  S  S  + +   E+F+
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFV 32


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 228 MIKSQHGCYRARNY*KSENSKEKYM*T*ENFM 133
           M+ +QH C R  NY  S  S  + +   E+F+
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFV 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,173
Number of Sequences: 438
Number of extensions: 2822
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)