Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_G06
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0012 - 7346282-7347136,7347234-7347593 46 2e-05
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 44 9e-05
11_01_0750 - 6315126-6315896,6316371-6316784 43 2e-04
11_01_0771 + 6453130-6454488 42 5e-04
11_02_0011 - 7337618-7338496,7338596-7338991 42 6e-04
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 40 0.001
05_06_0044 - 25150322-25151260 33 0.16
01_01_1152 + 9170628-9171899 33 0.28
01_06_0824 - 32243495-32244319,32244449-32244859 32 0.50
06_03_0673 + 23394027-23394094,23394267-23394539,23394613-233949... 28 6.1
11_01_0767 + 6438648-6438809,6439146-6440000 28 8.1
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 46.4 bits (105), Expect = 2e-05
Identities = 40/168 (23%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Frame = -3
Query: 619 YGTDGKYSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKD--VDDFGLEDVDVKLPRF 446
YG + SM + LP R + + A + +D ++ D+++PRF
Sbjct: 236 YGENVGLSMYIFLPDARDGLPALVDKMAVASSGTASSSFLRDHRPGRRRIKVGDLRVPRF 295
Query: 445 QISTNVVLNKPLNDMGV---YDIFQPDLANFQRITKENIFVSAIVHKADIEXXXXXXXXX 275
++S +N+ L MG+ +D+ + DL+ I E + V ++H+A +E
Sbjct: 296 KVSFYSEMNEVLKGMGIGAAFDVGKVDLSGM--IDGELVVVEKVMHRAVVEVNEEGTEAA 353
Query: 274 XXXXXXXTD---RISAPA-FHANRPFVYFVMEKTTTTVIFSGIYSKPT 143
+++P F A+ PF +FV+E+ + V+F+G PT
Sbjct: 354 AATACTMKFLCLTLTSPVDFVADHPFAFFVVEEKSDAVLFAGHVLDPT 401
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 44.4 bits (100), Expect = 9e-05
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Frame = -3
Query: 634 VXELPYGTDG---KYSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKDVDDFGLEDVD 464
V +LPY G ++SM ++LP + + + + +N + F L+K + +
Sbjct: 299 VLKLPYQQGGDKRQFSMYILLPEAQDGLWSLAEK---LNSEPEF--LEKHIPTRQVTVGQ 353
Query: 463 VKLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITK---ENIFVSAIVHKADIEXXX 293
KLP+F+IS + L +G++ F + + + +N+FVS++ HK+ +E
Sbjct: 354 FKLPKFKISFGFEASDLLKSLGLHLPFSSEADLTEMVDSPEGKNLFVSSVFHKSFVEVNE 413
Query: 292 XXXXXXXXXXXXXTDRISAPA---FHANRPFVYFVMEKTTTTVIFSG 161
T R SAP F A+ PF++ + E T V+F G
Sbjct: 414 EGTEAAAATAAVITLR-SAPIAEDFVADHPFLFLIQEDMTGVVLFVG 459
Score = 39.9 bits (89), Expect = 0.002
Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 7/189 (3%)
Frame = -3
Query: 691 MMYQKGQFPXSNLKKLKAFVXELPY---GTDGKYSMLVILPHPRTKIADMYKNFADVNLK 521
M +K Q+ S+ LK V +LPY G ++SM ++LP + + + + +N +
Sbjct: 535 MSTRKKQY-LSSYDSLK--VLKLPYLQGGDKRQFSMYILLPEAQDGLWSLAEK---LNSE 588
Query: 520 DVFKQLQKDVDDFGLEDVDVKLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITK-- 347
F ++ + + KLP+F+IS + L +G+ +F ++ + +
Sbjct: 589 PEF--MENHIPMRPVHVGQFKLPKFKISFGFGASGLLKGLGLPLLFGSEVDLIEMVDSPG 646
Query: 346 -ENIFVSAIVHKADIE-XXXXXXXXXXXXXXXXTDRISAPAFHANRPFVYFVMEKTTTTV 173
+N+FVS++ HK+ IE R F A+ PF++ + E T +
Sbjct: 647 AQNLFVSSVFHKSFIEVNEEGTEATAAVMVSMEHSRPRRLNFVADHPFMFLIREDVTGVI 706
Query: 172 IFSGIYSKP 146
+F G P
Sbjct: 707 LFIGHVVNP 715
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 43.2 bits (97), Expect = 2e-04
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 9/173 (5%)
Frame = -3
Query: 634 VXELPYG---TDGKYSMLVILPHPRTKIADM-YKNFADVNLKDVFKQLQKDVDDFGLEDV 467
V +LPY + K+SM + LP + ++ K F++ + +K V
Sbjct: 228 VIKLPYKQGKNERKFSMYIFLPDDHDGLFELTQKIFSEPMFLEQHLPTEKC-------HV 280
Query: 466 DVKLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITKEN-----IFVSAIVHKADIE 302
+ +P F+IS + + L DMG+ F + A F + KE+ +F+S ++HKA +E
Sbjct: 281 GISVPNFKISFQIDVKDFLKDMGLELPFLRE-AEFSDMIKEDDSSGPLFLSDVLHKAVLE 339
Query: 301 XXXXXXXXXXXXXXXXTDRISAPAFHANRPFVYFVMEKTTTTVIFSGIYSKPT 143
+ A F A+ PF + + E+ + TVIF G P+
Sbjct: 340 VDQKGIEETSVSMGLGKP-LPAQHFKADHPFFFMIREEVSGTVIFMGHVLDPS 391
>11_01_0771 + 6453130-6454488
Length = 452
Score = 41.9 bits (94), Expect = 5e-04
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Frame = -3
Query: 466 DVKLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITKEN-----IFVSAIVHKADIE 302
+ ++P+F++S + L +G+ F P+LA+ + +++ +FV I HKA IE
Sbjct: 335 EFRVPKFKVSCGGSVVGALEQLGLRLPFSPELADLSDMVEDDGSGWPLFVGDIQHKAVIE 394
Query: 301 XXXXXXXXXXXXXXXXTDRISAPA---FHANRPFVYFVMEKTTTTVIFSGIYSKPTV 140
P F A PF YF++E+ ++ V+F+G P++
Sbjct: 395 VNEEGTVAAAATMTRMLPSGVPPPPVDFVAEHPFAYFIVEEMSSAVVFAGHIVDPSM 451
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 41.5 bits (93), Expect = 6e-04
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 8/160 (5%)
Frame = -3
Query: 598 SMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKDVDDFGLEDVDVKLPRFQISTNVVLN 419
SM + LP R + + A + F L+ E D+++PRF++S +N
Sbjct: 263 SMYIFLPDERDGLPALVDKMAASSSSSSF--LRDHRPTRRREVGDLRVPRFKVSFYSQIN 320
Query: 418 KPLNDMGV---YDIFQPDLANFQRITKEN---IFVSAIVHKADIEXXXXXXXXXXXXXXX 257
L MGV +D + DL+ + + V + H+A +E
Sbjct: 321 GVLQGMGVTAAFDAGEADLSGMAEGVDQRGGGLVVEEVFHRAVVEVNEEGTEAAASTACT 380
Query: 256 XTD-RISAPA-FHANRPFVYFVMEKTTTTVIFSGIYSKPT 143
+S P F A+ PF +FV+E+T+ V+F+G PT
Sbjct: 381 IRLLSMSYPEDFVADHPFAFFVVEETSGAVLFAGHVLDPT 420
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 40.3 bits (90), Expect = 0.001
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 9/172 (5%)
Frame = -3
Query: 634 VXELPY--GTD-GKYSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKDVDDFGLEDVD 464
V +LPY G D ++SM ++LP + ++ A +N + F L+K + +
Sbjct: 91 VLKLPYQKGRDLRQFSMYILLPEAQD---GLWSLAAKLNSEPEF--LEKRIPTRQVTVGK 145
Query: 463 VKLPRFQISTNVVLNKPLNDMGVYDIF--QPDLANFQRIT-KENIFVSAIVHKADIEXXX 293
KLP+F+IS + L +G+ F + DL + N+FVS++ HK+ ++
Sbjct: 146 FKLPKFKISFGFEASDLLKILGLQLPFSSKADLTGMVGSPERHNLFVSSLFHKSFVQVDE 205
Query: 292 XXXXXXXXXXXXXTDRISAPA---FHANRPFVYFVMEKTTTTVIFSGIYSKP 146
+ R SAP F A+ PF++ + E T V+F G P
Sbjct: 206 EGTEAAAASAAVVSFR-SAPVTVDFVADHPFLFLIREDMTGVVLFIGHVVNP 256
>05_06_0044 - 25150322-25151260
Length = 312
Score = 33.5 bits (73), Expect = 0.16
Identities = 33/168 (19%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
Frame = -3
Query: 616 GTDGKYSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKDVDDFGLEDVDVKLPRFQIS 437
G D ++M + LP R + ++ + A N ++ + ++ K+P+F++S
Sbjct: 148 GGDKMFAMYIYLPDDRDGLPELARKLAS-NPAAFLRRTIVPAQPVAVGEL--KIPKFEVS 204
Query: 436 TNVVLNKPLNDMGVYDIFQPDLAN-FQRIT---KENIFVSAIVHKADI----EXXXXXXX 281
V ++ L + G+ F P N F + + VS+++H+ + E
Sbjct: 205 LKVEASRLLREFGLDLPFLPAADNSFSGMLLDPPQGTAVSSLLHQCFVNVNEEGTVAAAG 264
Query: 280 XXXXXXXXXTDRISAPAFHANRPFVYFVMEKTTTTVIFSGIYSKPTVY 137
F A+ PF++F++E+ + V+F+G P ++
Sbjct: 265 TVGEIMGFAMPDDQIVDFVADHPFLFFIVEEVSGLVVFAGQVVNPLLH 312
>01_01_1152 + 9170628-9171899
Length = 423
Score = 32.7 bits (71), Expect = 0.28
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Frame = -3
Query: 457 LPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITKENIFVSAIVHKADIEXXXXXXXX 278
+P+F+ S + +GV F + + +F++ + H+A IE
Sbjct: 314 VPKFKFSFKFEAKSDMRKLGVTRAFAGGDFSGMVTGGDGLFIAEVYHQATIEVDELGTVA 373
Query: 277 XXXXXXXXTDRISA--PA-FHANRPFVYFVMEKTTTTVIFSGIYSKP 146
+ S+ P F A+RPF++ V+E+ T V+F G P
Sbjct: 374 AASTAVVMMQKGSSLPPVDFVADRPFLFAVVEELTGAVLFLGHVVNP 420
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 31.9 bits (69), Expect = 0.50
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Frame = -3
Query: 457 LPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITK-----ENIFVSAIVHKADIEXXX 293
+PRF +S + L +G+ F+ A+ + + E I VSA+ H++ +E
Sbjct: 292 VPRFTLSYKTNAAETLRQLGLRLPFEYPGADLSEMVESSPEAEKIVVSAVYHESFVEVNE 351
Query: 292 XXXXXXXXXXXXXTDRISAPA-------FHANRPFVYFVMEKTTTTVIFSGIYSKPT 143
T +AP+ F A+ PF++ + E T V+F+G + P+
Sbjct: 352 EGTEAAAATAVVMTLGCAAPSAPVHVVDFVADHPFMFLIKEDLTGVVVFAGQVTNPS 408
>06_03_0673 +
23394027-23394094,23394267-23394539,23394613-23394958,
23395031-23395168,23395260-23395385,23395464-23395652,
23395723-23396202,23396274-23397236
Length = 860
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 301 PLYQLYALWPTRIYSPL*SAGSWLSLAGICRTLPCRLMAYLGR 429
P+ +ALW T + L A SWL +A + + P + YL R
Sbjct: 69 PVADAHALWVTSVACELWLAASWL-IAQLPKLSPANRVTYLDR 110
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -3
Query: 229 FHANRPFVYFVMEKTTTTVIFSGIYSKPT 143
F A+ PF +F++E+ + ++F+G P+
Sbjct: 307 FVADHPFAFFIVEERSQAIVFAGHVLDPS 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,105,732
Number of Sequences: 37544
Number of extensions: 285592
Number of successful extensions: 685
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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