Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_G01
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    28   0.49 
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   1.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   4.5  
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    25   6.0  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   6.0  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    24   7.9  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    24   7.9  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    24   7.9  

>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 256 NLFEMRVN-GVIIFTFLRFSSRYHSKKQKFDFANSTVGILKTTTHRPAE 399
           N+++  ++ G+ I  FLRF+++Y S+        +T G+     +RP E
Sbjct: 135 NIWQAEIDAGMEIIDFLRFNTKYASELYASQPPENTPGVWNRMEYRPLE 183


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 197 ENLPFDIHNRYKLTLYFILYAGSGLSAPYL 108
           E   F+++N Y LTL+ I++      AP++
Sbjct: 472 EKRSFEVNNMYSLTLFDIIFKSGMKIAPFI 501


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 162 LVTVVNVEG*ILARNTAVRMVSHEIRYHISAQFV 263
           L+T  NV   +L R+  V ++  E  YHI  Q +
Sbjct: 233 LITGANVNTYLLERSRVVSLLKGERNYHIFYQLI 266


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 299 NVKMITPLTRISNKLGRN 246
           NVK +TP  RI N LG N
Sbjct: 134 NVKKLTPKARILNLLGYN 151


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 320 YLLENRRNVKMITPLTRISNKLGRNVVTN 234
           YL   R   +  TPL+ ISN L  N V N
Sbjct: 214 YLESLREKRRTYTPLSEISNGLNSNGVEN 242


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 170 RYKLTLYFILYAGSGLS 120
           RY+LTLY +LY  S +S
Sbjct: 525 RYRLTLYIMLYTLSQIS 541


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 245 VVTNFVRNHSNGGIPGENLPF 183
           +    +RN ++ G P ENLPF
Sbjct: 204 IALQMIRNINDLGTPDENLPF 224


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 282 GNHLYVSTILE*VSQQKTEVRFCK*HSRYLKNYHSSA 392
           GN+L  S  L+ ++Q     +  +   +Y+KN+H+ +
Sbjct: 214 GNYLPKSDALDIIAQCHQHWKVSRDRKQYIKNFHNES 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,225
Number of Sequences: 5004
Number of extensions: 33879
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)