Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_F23
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical pr...    31   0.59 
U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical pr...    31   0.59 
Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z48621-4|CAA88542.1|  160|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U40427-3|AAA81469.1|  320|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68338-6|CAA92755.2|   99|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical
           protein F49E10.2a protein.
          Length = 790

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +3

Query: 354 TSNSTSTVKANVTKATLTRRPCPTTQIGIRKNIN*QITTSMW 479
           TS STST     T  T T  P PTT     K +   +TT  W
Sbjct: 625 TSTSTSTTTTTTTSTTATTTPQPTTTTTSEKPVT--LTTQTW 664


>U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical
           protein F49E10.2b protein.
          Length = 842

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +3

Query: 354 TSNSTSTVKANVTKATLTRRPCPTTQIGIRKNIN*QITTSMW 479
           TS STST     T  T T  P PTT     K +   +TT  W
Sbjct: 625 TSTSTSTTTTTTTSTTATTTPQPTTTTTSEKPVT--LTTQTW 664


>Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical
           protein F15D4.4 protein.
          Length = 608

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 339 QIIIPTSNSTSTVKANVTKATLTRRPCPTT 428
           Q  IPT+  TST     T  T+T  P PTT
Sbjct: 86  QTTIPTTTPTSTQTTTPTTTTITTTPVPTT 115


>Z48621-4|CAA88542.1|  160|Caenorhabditis elegans Hypothetical
           protein R07B1.5 protein.
          Length = 160

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +3

Query: 348 IPTSNSTSTVKANVTKATLTRRPCPTTQIGI 440
           I TS ST+TV    T  T     C T QIGI
Sbjct: 41  IATSTSTTTVTTTTTVVTAACATCTTAQIGI 71


>U40427-3|AAA81469.1|  320|Caenorhabditis elegans Hypothetical
           protein F43C9.1 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 330 VTKMNYNVPFSIHSDGLKKILFIFY*FLTPSSS 232
           VT  N N+P S HSD LK   F  + +++ + S
Sbjct: 157 VTVENSNLPISFHSDSLKSAKFDHFRWISSTGS 189


>Z68338-6|CAA92755.2|   99|Caenorhabditis elegans Hypothetical
           protein T24B8.5 protein.
          Length = 99

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = -1

Query: 545 IRXKIGVIYLESYFSESQNLLTPHTRCNLSINVFAYSNLRCGTRSAC*CCFSDIRFHCAS 366
           +R  IG + +   ++ S++ +     C    N    +++R G R  C  C +D  F C  
Sbjct: 1   MRYLIGFVIVLVAYTASESCVDSRPSCPSLKNYCNEADVRSGCRKTCGVCVTDTPFVCED 60

Query: 365 GV*SWYNYL 339
            +    NY+
Sbjct: 61  KLGLCPNYV 69


>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
            protein R193.2 protein.
          Length = 1853

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 407  TQTVSHNANWNTQKH*LTDYNEYVVLINFE 496
            ++T+S N +  T +H  T Y+ YV+  NF+
Sbjct: 1815 SETISPNIDGPTSRHLNTRYSTYVIQTNFD 1844


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,109,579
Number of Sequences: 27780
Number of extensions: 256183
Number of successful extensions: 505
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)