Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_F20
         (614 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113483-1|AAI13484.1|  747|Homo sapiens family with sequence si...    35   0.26 
AK091138-1|BAC03594.1|  565|Homo sapiens protein ( Homo sapiens ...    35   0.26 
AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens ...    33   0.61 
U77783-1|AAC15910.1| 1336|Homo sapiens N-methyl-D-aspartate rece...    33   0.80 
AB209292-1|BAD92529.1|  610|Homo sapiens N-methyl-D-aspartate re...    33   0.80 
AK057435-1|BAB71485.1|  170|Homo sapiens protein ( Homo sapiens ...    33   1.1  
AK126884-1|BAC86735.1|  175|Homo sapiens protein ( Homo sapiens ...    32   1.4  
AK124627-1|BAC85906.1|  175|Homo sapiens protein ( Homo sapiens ...    31   3.2  
AK127830-1|BAC87151.1|  190|Homo sapiens protein ( Homo sapiens ...    30   5.6  
AK097452-1|BAC05058.1|  225|Homo sapiens protein ( Homo sapiens ...    30   5.6  
AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    29   9.9  
AK096940-1|BAC04906.1|  226|Homo sapiens protein ( Homo sapiens ...    29   9.9  

>BC113483-1|AAI13484.1|  747|Homo sapiens family with sequence
           similarity 83, member C protein.
          Length = 747

 Score = 34.7 bits (76), Expect = 0.26
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 170 RELSNQPTRRRW--NPSHQPSSCIYPC*CRARLGSIGPRRWAQSERQVNHN 316
           RE S QP+  R   +P+H     +Y    RA LG +G   W+QS   +NHN
Sbjct: 386 REASGQPSLHRQLSDPNHGSPPGLY----RANLGKLGAYPWSQSSPALNHN 432


>AK091138-1|BAC03594.1|  565|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33819 fis, clone CTONG2003189. ).
          Length = 565

 Score = 34.7 bits (76), Expect = 0.26
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 170 RELSNQPTRRRW--NPSHQPSSCIYPC*CRARLGSIGPRRWAQSERQVNHN 316
           RE S QP+  R   +P+H     +Y    RA LG +G   W+QS   +NHN
Sbjct: 204 REASGQPSLHRQLSDPNHGSPPGLY----RANLGKLGAYPWSQSSPALNHN 250


>AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45698 fis, clone FEBRA2017811. ).
          Length = 415

 Score = 33.5 bits (73), Expect = 0.61
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -2

Query: 172 SHSTYRPQTHTNRTCTHTYAAPLPHTHKHMYIN---YTTTRIHVYT 44
           +H    P TH + TCTH ++    +TH H +I+   +T T  H YT
Sbjct: 267 THMDTYPHTHIH-TCTHMHSHAHINTHTHAHIHMHMHTHTHTHTYT 311



 Score = 32.7 bits (71), Expect = 1.1
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
 Frame = -2

Query: 145 HTNRTCTH----TYAAPLPHTHKHMYIN-YTTTRIHVYT 44
           HT+ TCTH    TY     HTH H+Y + +T T IH+++
Sbjct: 128 HTH-TCTHIYTCTYTVVCTHTHMHIYTHMHTHTCIHIHS 165



 Score = 31.1 bits (67), Expect = 3.2
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
 Frame = -2

Query: 172 SHSTYRPQTHTN---RTCTHTYAAPLPHTHKHMYIN-----YTTTRIHVYT 44
           SH+     TH +      THT+     H H H++IN     YT T I  YT
Sbjct: 285 SHAHINTHTHAHIHMHMHTHTHTHTYTHAHAHIHINTYMHTYTYTHIRTYT 335



 Score = 30.3 bits (65), Expect = 5.6
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 148 THTNRTCTHTYAAPLPHTHKHMYI-NYTTTRIHVYT 44
           THT  TCT T      HTH H+++  +T T  H++T
Sbjct: 173 THT-LTCTQTQIHTCTHTHIHIHMPTHTRTYTHMHT 207


>U77783-1|AAC15910.1| 1336|Homo sapiens N-methyl-D-aspartate receptor
            2D subunit precursor protein.
          Length = 1336

 Score = 33.1 bits (72), Expect = 0.80
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -2

Query: 211  WIPPSPSWLVTKLSHSTYR---PQTHTNRT-CTH-TYAAPLPHTHKH 86
            W PP P W    L     R   P++H +R   +H T AA  PH H+H
Sbjct: 1207 WAPPPPPWAAGPLPRRRARCGCPRSHPHRPRASHRTPAAAAPHHHRH 1253


>AB209292-1|BAD92529.1|  610|Homo sapiens N-methyl-D-aspartate
           receptor subunit 2D precursor variant protein.
          Length = 610

 Score = 33.1 bits (72), Expect = 0.80
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -2

Query: 211 WIPPSPSWLVTKLSHSTYR---PQTHTNRT-CTH-TYAAPLPHTHKH 86
           W PP P W    L     R   P++H +R   +H T AA  PH H+H
Sbjct: 481 WAPPPPPWAAGPLPRRRARCGCPRSHPHRPRASHRTPAAAAPHHHRH 527


>AK057435-1|BAB71485.1|  170|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32873 fis, clone TESTI2003998, weakly similar to
           T-CELL RECEPTOR BETA CHAIN ANA 11. ).
          Length = 170

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -2

Query: 172 SHSTYRPQTHTNRTCTHTYAAPLPHTHKH---MYINYTTTRIHVYT*CN 35
           SH+    QT T  TCTHT+   + H H H       YTT   H +T  N
Sbjct: 87  SHTHAHTQTWTY-TCTHTHTHAVTHVHMHAGTQTRTYTTLHKHAHTDTN 134


>AK126884-1|BAC86735.1|  175|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44936 fis, clone BRAMY3018121. ).
          Length = 175

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 133 TCTHTYAAPLPHTHKHMYIN-YTTTRIHVYT 44
           T  HTY     HTHKH++ + +  T  H+YT
Sbjct: 109 THMHTYTCTCTHTHKHIHAHIHIHTHTHIYT 139



 Score = 30.7 bits (66), Expect = 4.3
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 172 SHSTYRPQTHT-NRTCTHTYAAPLPHTHKHMYINYTTTRIHVYT 44
           +H+  R   HT   T TH +   L +TH HM   +T T+ H+YT
Sbjct: 13  THAHIRTCIHTCTDTHTHMHTHTLTYTHIHM---HTHTQTHIYT 53


>AK124627-1|BAC85906.1|  175|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42636 fis, clone BRACE3023912. ).
          Length = 175

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 136 RTCTHTYAAPLPHTHKHMYINYTTTRIHVYT 44
           RTCTHT+A  L H   H    Y  TR++  T
Sbjct: 32  RTCTHTHAQALMHRCTHTQGMYLHTRVNTRT 62



 Score = 30.3 bits (65), Expect = 5.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 163 TYRPQTHTNRTCTHTYAAPLPHTHKHMYINYTTTRIHVYT 44
           TY   T+ + T THT+   L H   H    Y  TR+H +T
Sbjct: 135 TYAQCTYLH-TRTHTHTQALMHRCTHTQCTYLHTRVHAHT 173


>AK127830-1|BAC87151.1|  190|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45933 fis, clone PLACE7003639. ).
          Length = 190

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 447 CCITYLSIFRGLSLQCG-LVWSFSVKISAFSDNPLDIVV 334
           C   +LS F GLSL    L W+FSV +S F    L + V
Sbjct: 68  CLSLHLSSFPGLSLSLSSLFWAFSVSVSLFFSLLLSVSV 106


>AK097452-1|BAC05058.1|  225|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40133 fis, clone TESTI2012231. ).
          Length = 225

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 181 TKLSHSTYRPQTHTNRTCTHTYAAPLPHTHKHMYINYTTTRIHV 50
           T  +H+T+    ++ +  THT   PL  TH H  + + T R H+
Sbjct: 44  THHTHTTHTTHINSYKAFTHTTHTPLTSTHLHTPLTH-TPRTHI 86


>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 127 THTYAAPLPH--THKHMYINYTTTRIHVYT 44
           TH Y     H  THKHMY+ YT   ++ YT
Sbjct: 37  THRYMCTRKHMYTHKHMYV-YTYIYVYTYT 65


>AK096940-1|BAC04906.1|  226|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39621 fis, clone SMINT2001158. ).
          Length = 226

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 169 HSTYRPQTHTNRTCTHTYAAPLPHTHKHMYINYTT 65
           HS   P TH++   +HTY   L H H H + + +T
Sbjct: 29  HSHTHPLTHSH-PLSHTYPLTLTHIHTHPHTHIST 62



 Score = 29.5 bits (63), Expect = 9.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = -2

Query: 172 SHSTYRPQTHTNR-TCTHTYAAPLPHTHKHMYIN---YTTTRIHVY 47
           SH      THT+  T TH   + + HTH H + +   YT T  H +
Sbjct: 103 SHIHSNTPTHTHPLTSTHIQTSTVTHTHSHTHAHKHTYTHTSTHTH 148


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,410,374
Number of Sequences: 237096
Number of extensions: 1753337
Number of successful extensions: 3887
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3864
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)