Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_F20
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D38540-1|BAA07543.1|  284|Caenorhabditis elegans CeTMI protein.        41   8e-04
AL132877-1|CAC70114.1|  284|Caenorhabditis elegans Hypothetical ...    41   8e-04
D38539-1|BAA07540.1|  284|Caenorhabditis elegans CeTMI protein.        36   0.017
U39650-4|AAK39186.1|  944|Caenorhabditis elegans Apical junction...    31   0.86 
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction...    31   0.86 
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction...    31   0.86 
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction...    31   0.86 
AF101309-3|AAN60514.1|  760|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81036-2|CAD30433.1|  431|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81036-1|CAB02742.1|  473|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    27   8.1  
D38542-1|BAA07545.1|  256|Caenorhabditis elegans CeTMIII protein.      27   8.1  
D38539-3|BAA07542.1|  256|Caenorhabditis elegans CeTMIII protein.      27   8.1  
AL132877-5|CAD45604.1|  256|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF291851-1|AAK55968.1|  103|Caenorhabditis elegans G protein sig...    27   8.1  

>D38540-1|BAA07543.1|  284|Caenorhabditis elegans CeTMI protein.
          Length = 284

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 16/28 (57%), Positives = 24/28 (85%)
 Frame = -1

Query: 263 QDELGINKDRYKSLADEMDSTFAELAGY 180
           +DEL   K+RYK++++E+DSTF EL+GY
Sbjct: 257 EDELVHEKERYKTISEELDSTFQELSGY 284


>AL132877-1|CAC70114.1|  284|Caenorhabditis elegans Hypothetical
           protein Y105E8B.1a protein.
          Length = 284

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 16/28 (57%), Positives = 24/28 (85%)
 Frame = -1

Query: 263 QDELGINKDRYKSLADEMDSTFAELAGY 180
           +DEL   K+RYK++++E+DSTF EL+GY
Sbjct: 257 EDELVHEKERYKTISEELDSTFQELSGY 284


>D38539-1|BAA07540.1|  284|Caenorhabditis elegans CeTMI protein.
          Length = 284

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 14/28 (50%), Positives = 22/28 (78%)
 Frame = -1

Query: 263 QDELGINKDRYKSLADEMDSTFAELAGY 180
           +DEL   K+RYK++++E+DS   EL+GY
Sbjct: 257 EDELVHEKERYKTISEELDSNLPELSGY 284


>U39650-4|AAK39186.1|  944|Caenorhabditis elegans Apical junction
           molecule protein1, isoform b protein.
          Length = 944

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
 Frame = -2

Query: 328 PALFVVINLSFALRPPPWTYASK-----TSSASTRIDTRAWLMRWIPPSPSWLVTKLSHS 164
           P   VV++ S    PPP   +++     T++ +T    + W    I  +P   V+ LS +
Sbjct: 17  PPASVVLHPSAPPPPPPPLSSTEVVGNTTTTTTTHYAPKTWNDPSITTAPKIPVSLLSGA 76

Query: 163 TYRPQTHTNRTCTHTYAAP 107
              P   T RT T +Y+AP
Sbjct: 77  QPLPSVLTQRTTTSSYSAP 95


>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
           molecule protein1, isoform c protein.
          Length = 1148

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
 Frame = -2

Query: 328 PALFVVINLSFALRPPPWTYASK-----TSSASTRIDTRAWLMRWIPPSPSWLVTKLSHS 164
           P   VV++ S    PPP   +++     T++ +T    + W    I  +P   V+ LS +
Sbjct: 17  PPASVVLHPSAPPPPPPPLSSTEVVGNTTTTTTTHYAPKTWNDPSITTAPKIPVSLLSGA 76

Query: 163 TYRPQTHTNRTCTHTYAAP 107
              P   T RT T +Y+AP
Sbjct: 77  QPLPSVLTQRTTTSSYSAP 95


>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
           molecule protein1, isoform d protein.
          Length = 1439

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
 Frame = -2

Query: 328 PALFVVINLSFALRPPPWTYASK-----TSSASTRIDTRAWLMRWIPPSPSWLVTKLSHS 164
           P   VV++ S    PPP   +++     T++ +T    + W    I  +P   V+ LS +
Sbjct: 17  PPASVVLHPSAPPPPPPPLSSTEVVGNTTTTTTTHYAPKTWNDPSITTAPKIPVSLLSGA 76

Query: 163 TYRPQTHTNRTCTHTYAAP 107
              P   T RT T +Y+AP
Sbjct: 77  QPLPSVLTQRTTTSSYSAP 95


>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
           molecule protein1, isoform a protein.
          Length = 1480

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
 Frame = -2

Query: 328 PALFVVINLSFALRPPPWTYASK-----TSSASTRIDTRAWLMRWIPPSPSWLVTKLSHS 164
           P   VV++ S    PPP   +++     T++ +T    + W    I  +P   V+ LS +
Sbjct: 17  PPASVVLHPSAPPPPPPPLSSTEVVGNTTTTTTTHYAPKTWNDPSITTAPKIPVSLLSGA 76

Query: 163 TYRPQTHTNRTCTHTYAAP 107
              P   T RT T +Y+AP
Sbjct: 77  QPLPSVLTQRTTTSSYSAP 95


>AF101309-3|AAN60514.1|  760|Caenorhabditis elegans Hypothetical
           protein H24G06.1c protein.
          Length = 760

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 610 MYXPSDLRHQPFFHTFPRTLCLTEHSLDFSFIAGRNDKFKISF 482
           +Y P  L++ P    FP   CL   S   +F+ G  D+  I F
Sbjct: 326 VYDPQQLQNHPEDAIFPEPRCLVASSSSPTFVVGYADRSLIEF 368


>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
           protein H24G06.1b protein.
          Length = 1601

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 610 MYXPSDLRHQPFFHTFPRTLCLTEHSLDFSFIAGRNDKFKISF 482
           +Y P  L++ P    FP   CL   S   +F+ G  D+  I F
Sbjct: 326 VYDPQQLQNHPEDAIFPEPRCLVASSSSPTFVVGYADRSLIEF 368


>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
           protein H24G06.1a protein.
          Length = 1680

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 610 MYXPSDLRHQPFFHTFPRTLCLTEHSLDFSFIAGRNDKFKISF 482
           +Y P  L++ P    FP   CL   S   +F+ G  D+  I F
Sbjct: 326 VYDPQQLQNHPEDAIFPEPRCLVASSSSPTFVVGYADRSLIEF 368


>Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK858.6 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -2

Query: 316 VVINLSFALRPPPWTYASKTSSASTRIDTRAWLMRWIPPS 197
           + +   F  R  P+T+  +T+    ++  + W +R IP S
Sbjct: 441 IFLGFYFGYRKQPYTHPVRTNQIPRQVPEQPWFLRLIPSS 480


>Z81036-2|CAD30433.1|  431|Caenorhabditis elegans Hypothetical
           protein C16C2.2b protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -2

Query: 304 LSFALRPPPWTYASKTSSAS-TRIDTRAWLMRWI-PPSPS--WLVTKLS 170
           L FA++  PW  A K S    T +D RA    ++ PP PS  W+  + S
Sbjct: 214 LRFAIKTKPWLKALKASDTMVTWVDQRAEFDPFLHPPQPSNPWISDEAS 262


>Z81036-1|CAB02742.1|  473|Caenorhabditis elegans Hypothetical
           protein C16C2.2a protein.
          Length = 473

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -2

Query: 304 LSFALRPPPWTYASKTSSAS-TRIDTRAWLMRWI-PPSPS--WLVTKLS 170
           L FA++  PW  A K S    T +D RA    ++ PP PS  W+  + S
Sbjct: 214 LRFAIKTKPWLKALKASDTMVTWVDQRAEFDPFLHPPQPSNPWISDEAS 262


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 211 WIPPSPSWLVTKLSHSTYRPQTHTNRTCTHTYAAPLPHTHKHMYINYTTTR 59
           +I P+P+     +  ST +PQ       T  Y AP   T +  YI  TT R
Sbjct: 221 YIEPTPARPAPYIEPSTAKPQPRPQPPRTRPYVAPSTTTQR--YIEPTTQR 269


>D38542-1|BAA07545.1|  256|Caenorhabditis elegans CeTMIII protein.
          Length = 256

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 263 QDELGINKDRYKSLADEMDSTFAELAG 183
           +DEL + K+R ++L +E++ T  E+ G
Sbjct: 229 EDELLLEKERVRNLTEEIEQTVQEIQG 255


>D38539-3|BAA07542.1|  256|Caenorhabditis elegans CeTMIII protein.
          Length = 256

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 263 QDELGINKDRYKSLADEMDSTFAELAG 183
           +DEL + K+R ++L +E++ T  E+ G
Sbjct: 229 EDELLLEKERVRNLTEEIEQTVQEIQG 255


>AL132877-5|CAD45604.1|  256|Caenorhabditis elegans Hypothetical
           protein Y105E8B.1e protein.
          Length = 256

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 263 QDELGINKDRYKSLADEMDSTFAELAG 183
           +DEL + K+R ++L +E++ T  E+ G
Sbjct: 229 EDELLLEKERVRNLTEEIEQTVQEIQG 255


>AF291851-1|AAK55968.1|  103|Caenorhabditis elegans G protein
           signaling regulator EAT-16 protein.
          Length = 103

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -2

Query: 304 LSFALRPPPWTYASKTSSAS-TRIDTRAWLMRWI-PPSPS--WLVTKLS 170
           L FA++  PW  A K S    T +D RA    ++ PP PS  W+  + S
Sbjct: 14  LRFAIKTKPWLKALKASDTMVTWVDQRAEFDPFLHPPQPSNPWISDEAS 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,562,530
Number of Sequences: 27780
Number of extensions: 272369
Number of successful extensions: 624
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)