Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_F19
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   5.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   5.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
 Frame = -2

Query: 345 LYKAWYRQIPYIVKDYDI-----PKS---EAQCREKLKELFIKNKHVTDIRVIDMLVIKG 190
           +YK++   I    KD ++     PKS   E  C  K  E+F       D   +   V KG
Sbjct: 453 MYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIFKDKSDWFDYSEVSKWVQKG 512

Query: 189 QMELKESVN 163
           Q+ LKE  N
Sbjct: 513 QICLKEKEN 521


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 101 KISFRNALLETNDXLIDFGXSLKLLNLSN 15
           +++FR   L+      DFG  LK L L++
Sbjct: 83  QLTFREQWLDERLRFNDFGGRLKYLTLTD 111


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 101 KISFRNALLETNDXLIDFGXSLKLLNLSN 15
           +++FR   L+      DFG  LK L L++
Sbjct: 83  QLTFREQWLDERLRFNDFGGRLKYLTLTD 111


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 174 LSTPFDP**PAYQ*LEYQSH 233
           + TPFDP  P    ++ QSH
Sbjct: 775 VQTPFDPDVPIELQIQKQSH 794


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,233
Number of Sequences: 438
Number of extensions: 2646
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)