Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_F14
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   192   4e-50
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   177   9e-46
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    27   1.9  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   2.5  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   4.4  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.7  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  192 bits (468), Expect = 4e-50
 Identities = 90/124 (72%), Positives = 105/124 (84%)
 Frame = -2

Query: 681 SNPESKVFYLKMKGDXYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLG 502
           ++ ESKVFY KMKGD YRYLAE A GE R    + S + Y+ A EI+ A++ PTHPIRLG
Sbjct: 115 ASAESKVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLG 174

Query: 501 LALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWT 322
           LALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD+L+E+SYKDSTLIMQLLRDNLTLWT
Sbjct: 175 LALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWT 234

Query: 321 SDTQ 310
           SD +
Sbjct: 235 SDAE 238


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  177 bits (432), Expect = 9e-46
 Identities = 83/121 (68%), Positives = 99/121 (81%)
 Frame = -2

Query: 672 ESKVFYLKMKGDXYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLAL 493
           ESKVFY KMKGD YRYLAE   GE      + S +AY+ A +I+ A++ PT P+RLGLAL
Sbjct: 117 ESKVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLAL 176

Query: 492 NFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDT 313
           NFSVFYYEIL+SP+ AC LAKQ FD+AI+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD 
Sbjct: 177 NFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDA 236

Query: 312 Q 310
           +
Sbjct: 237 E 237


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 157 LASASVMIPRQTTFSNVTRFLI-NTDENKCVCWGECGEILVVAA 285
           L + SV+I   +TFS V+R L  +T   + VCW  C   L+ A+
Sbjct: 43  LVNGSVVIWDLSTFS-VSRVLTGHTRAIQSVCWSSCDRFLLTAS 85


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -2

Query: 630  RYLAEVATG-ETRHSVVEDSQKAYQDAFEISKAKMQPTHP-IRLGLALNFS 484
            RY+  ++   E R    ED+++A + ++  + A +QP H  I L LA+N S
Sbjct: 1049 RYIVALSCELERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINAS 1099


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = -2

Query: 573 QKAYQDAFEISKAKMQPTHPIRL-GLALNF-SVFYYEILNSPDKACQLAKQAFDDAIAEL 400
           Q+   D  E   +   P H        L F S  Y ++    D   QLA Q F     ++
Sbjct: 415 QRLVADLHEFYNSVKGPAHSFETEDPVLKFVSQSYDDLFPYMDNFIQLAVQLFYHISKKV 474

Query: 399 DTLNEDSYKDSTLIMQLLRDN 337
           + L  +++  S  ++Q ++DN
Sbjct: 475 NCLYVEAFSSSDAVLQRIQDN 495


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 520 CGLHFRLADFKSILVCFL*ILYNRMSGFSCGHFC 621
           C L+F L + K+ L+    I+Y  + GFS  H C
Sbjct: 46  CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,269
Number of Sequences: 5004
Number of extensions: 48502
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)