Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_F13
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    27   1.6  
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   3.8  

>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 12  INHLSFHPCVKFVFHNLVLXH 74
           I+HL + P + F  HN+VL H
Sbjct: 152 ISHLPYGPTLSFSLHNVVLRH 172


>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 337 YCEVMQHIVRFRVTYCVENIISNR 266
           Y  +  HI+R RV Y VENI S +
Sbjct: 166 YTNLADHILRQRVIYNVENIHSRK 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,798
Number of Sequences: 5004
Number of extensions: 44428
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)