Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_F08
         (783 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9V3G1 Cluster: 60S ribosomal protein L8; n=71; Eukaryo...    73   8e-12
UniRef50_Q06B43 Cluster: Ribosomal protein; n=7; Coelomata|Rep: ...    69   1e-10
UniRef50_P62917 Cluster: 60S ribosomal protein L8; n=122; cellul...    62   1e-08
UniRef50_Q3LWH0 Cluster: Ribosomal protein L8; n=1; Bigelowiella...    52   1e-05
UniRef50_A7DQR3 Cluster: Ribosomal protein L2; n=1; Candidatus N...    50   7e-05
UniRef50_Q97BX4 Cluster: 50S ribosomal protein L2P; n=4; Thermop...    50   7e-05
UniRef50_Q8TY93 Cluster: 50S ribosomal protein L2P; n=17; Euryar...    50   7e-05
UniRef50_Q9YFN1 Cluster: 50S ribosomal protein L2P; n=3; Archaea...    49   2e-04
UniRef50_A0RZ09 Cluster: Ribosomal protein L2; n=2; Crenarchaeot...    48   2e-04
UniRef50_Q8SSM6 Cluster: 60S ribosomal protein L8; n=1; Encephal...    45   0.002
UniRef50_Q8TRU4 Cluster: 50S ribosomal protein L2P; n=12; Archae...    45   0.002
UniRef50_Q975I4 Cluster: 50S ribosomal protein L2P; n=10; Archae...    44   0.003
UniRef50_UPI00015BAE9D Cluster: LSU ribosomal protein L2P; n=1; ...    43   0.008
UniRef50_A4GHT7 Cluster: Putative uncharacterized protein; n=1; ...    35   2.0  
UniRef50_P60408 Cluster: 50S ribosomal protein L2P; n=1; Nanoarc...    34   4.6  

>UniRef50_Q9V3G1 Cluster: 60S ribosomal protein L8; n=71;
           Eukaryota|Rep: 60S ribosomal protein L8 - Drosophila
           melanogaster (Fruit fly)
          Length = 256

 Score = 72.9 bits (171), Expect = 8e-12
 Identities = 33/34 (97%), Positives = 33/34 (97%)
 Frame = -1

Query: 783 VEHPXGGGNHQHIGKASTVKRGTSAGRKVGLIAA 682
           VEHP GGGNHQHIGKASTVKRGTSAGRKVGLIAA
Sbjct: 207 VEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 240


>UniRef50_Q06B43 Cluster: Ribosomal protein; n=7; Coelomata|Rep:
           Ribosomal protein - Codakia orbicularis
          Length = 234

 Score = 68.9 bits (161), Expect = 1e-10
 Identities = 31/34 (91%), Positives = 32/34 (94%)
 Frame = -1

Query: 783 VEHPXGGGNHQHIGKASTVKRGTSAGRKVGLIAA 682
           VEHP GGGNHQHIGKASTV+R TSAGRKVGLIAA
Sbjct: 183 VEHPHGGGNHQHIGKASTVRRDTSAGRKVGLIAA 216


>UniRef50_P62917 Cluster: 60S ribosomal protein L8; n=122; cellular
           organisms|Rep: 60S ribosomal protein L8 - Homo sapiens
           (Human)
          Length = 257

 Score = 62.5 bits (145), Expect = 1e-08
 Identities = 27/34 (79%), Positives = 29/34 (85%)
 Frame = -1

Query: 783 VEHPXGGGNHQHIGKASTVKRGTSAGRKVGLIAA 682
           VEHP GGGNHQHIGK ST++R   AGRKVGLIAA
Sbjct: 207 VEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 240


>UniRef50_Q3LWH0 Cluster: Ribosomal protein L8; n=1; Bigelowiella
           natans|Rep: Ribosomal protein L8 - Bigelowiella natans
           (Pedinomonas minutissima) (Chlorarachnion sp.(strain
           CCMP 621))
          Length = 281

 Score = 52.4 bits (120), Expect = 1e-05
 Identities = 23/32 (71%), Positives = 25/32 (78%)
 Frame = -1

Query: 777 HPXGGGNHQHIGKASTVKRGTSAGRKVGLIAA 682
           HP GGGNHQHIG  STV R +  G+KVGLIAA
Sbjct: 235 HPHGGGNHQHIGHPSTVSRRSPPGQKVGLIAA 266


>UniRef50_A7DQR3 Cluster: Ribosomal protein L2; n=1; Candidatus
           Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L2
           - Candidatus Nitrosopumilus maritimus SCM1
          Length = 244

 Score = 50.0 bits (114), Expect = 7e-05
 Identities = 21/32 (65%), Positives = 24/32 (75%)
 Frame = -1

Query: 777 HPXGGGNHQHIGKASTVKRGTSAGRKVGLIAA 682
           HP GGG HQH+G++STV R T  G KVG IAA
Sbjct: 201 HPHGGGRHQHVGQSSTVSRDTPPGAKVGSIAA 232


>UniRef50_Q97BX4 Cluster: 50S ribosomal protein L2P; n=4;
           Thermoplasmatales|Rep: 50S ribosomal protein L2P -
           Thermoplasma volcanium
          Length = 234

 Score = 50.0 bits (114), Expect = 7e-05
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = -1

Query: 783 VEHPXGGGNHQHIGKASTVKRGTSAGRKVGLIA 685
           V HP GGGNHQH+G+ STV R    GRKVG ++
Sbjct: 192 VNHPHGGGNHQHVGRPSTVGRNAPPGRKVGRLS 224


>UniRef50_Q8TY93 Cluster: 50S ribosomal protein L2P; n=17;
           Euryarchaeota|Rep: 50S ribosomal protein L2P -
           Methanopyrus kandleri
          Length = 243

 Score = 50.0 bits (114), Expect = 7e-05
 Identities = 22/34 (64%), Positives = 25/34 (73%)
 Frame = -1

Query: 783 VEHPXGGGNHQHIGKASTVKRGTSAGRKVGLIAA 682
           V+HP GGGNHQ  GK +T+ RG   GRKVG IAA
Sbjct: 201 VDHPFGGGNHQSPGKPTTIARGDPPGRKVGHIAA 234


>UniRef50_Q9YFN1 Cluster: 50S ribosomal protein L2P; n=3;
           Archaea|Rep: 50S ribosomal protein L2P - Aeropyrum
           pernix
          Length = 238

 Score = 48.8 bits (111), Expect = 2e-04
 Identities = 22/34 (64%), Positives = 24/34 (70%)
 Frame = -1

Query: 783 VEHPXGGGNHQHIGKASTVKRGTSAGRKVGLIAA 682
           V+HP GGG HQH G+ STV R    GRKVG IAA
Sbjct: 197 VDHPFGGGRHQHKGRPSTVARTAPPGRKVGHIAA 230


>UniRef50_A0RZ09 Cluster: Ribosomal protein L2; n=2;
           Crenarchaeota|Rep: Ribosomal protein L2 - Cenarchaeum
           symbiosum
          Length = 243

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 20/32 (62%), Positives = 23/32 (71%)
 Frame = -1

Query: 777 HPXGGGNHQHIGKASTVKRGTSAGRKVGLIAA 682
           HP GGG HQH+G++STV R    G KVG IAA
Sbjct: 200 HPHGGGRHQHVGQSSTVSRNAPPGAKVGSIAA 231


>UniRef50_Q8SSM6 Cluster: 60S ribosomal protein L8; n=1;
           Encephalitozoon cuniculi|Rep: 60S ribosomal protein L8 -
           Encephalitozoon cuniculi
          Length = 239

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
 Frame = -1

Query: 783 VEHPXGGGNHQHIGKASTV-KRGTSAGRKVGLIAA 682
           VEH  GGGNHQH+GK +TV K+  S  +K+GL+ A
Sbjct: 193 VEHIHGGGNHQHVGKPTTVSKKDISQEQKIGLVGA 227


>UniRef50_Q8TRU4 Cluster: 50S ribosomal protein L2P; n=12;
           Archaea|Rep: 50S ribosomal protein L2P - Methanosarcina
           acetivorans
          Length = 238

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 20/33 (60%), Positives = 23/33 (69%)
 Frame = -1

Query: 780 EHPXGGGNHQHIGKASTVKRGTSAGRKVGLIAA 682
           +HP GGG  +H GK +TV R    GRKVGLIAA
Sbjct: 199 DHPFGGGAWKHPGKPTTVSRNAPPGRKVGLIAA 231


>UniRef50_Q975I4 Cluster: 50S ribosomal protein L2P; n=10;
           Archaea|Rep: 50S ribosomal protein L2P - Sulfolobus
           tokodaii
          Length = 238

 Score = 44.4 bits (100), Expect = 0.003
 Identities = 20/34 (58%), Positives = 22/34 (64%)
 Frame = -1

Query: 783 VEHPXGGGNHQHIGKASTVKRGTSAGRKVGLIAA 682
           V HP GGG HQ + + STV R    GRKVG IAA
Sbjct: 196 VSHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAA 229


>UniRef50_UPI00015BAE9D Cluster: LSU ribosomal protein L2P; n=1;
           Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
           L2P - Ignicoccus hospitalis KIN4/I
          Length = 251

 Score = 43.2 bits (97), Expect = 0.008
 Identities = 20/34 (58%), Positives = 22/34 (64%)
 Frame = -1

Query: 783 VEHPXGGGNHQHIGKASTVKRGTSAGRKVGLIAA 682
           V HP GGGNHQ  G  +TV R    G+KVG IAA
Sbjct: 201 VNHPHGGGNHQSPGYPTTVARNAPPGQKVGHIAA 234


>UniRef50_A4GHT7 Cluster: Putative uncharacterized protein; n=1;
           uncultured marine bacterium EB0_39H12|Rep: Putative
           uncharacterized protein - uncultured marine bacterium
           EB0_39H12
          Length = 222

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +2

Query: 365 ENMNSAHYIEKESLFQIRSEQK*YLIRLSGDLSHTNRNYVFFLDNFSTVK 514
           E +N    IE   +  IRSE   YLI +SGDL+   +N +    NF   K
Sbjct: 173 EEINKIGIIEPSKISYIRSEDGIYLISISGDLALEKKNQILQRANFLLTK 222


>UniRef50_P60408 Cluster: 50S ribosomal protein L2P; n=1;
           Nanoarchaeum equitans|Rep: 50S ribosomal protein L2P -
           Nanoarchaeum equitans
          Length = 238

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 780 EHPXGGGNHQHIGKASTVKRGTSAGRKVGLIAA 682
           +HP GG  H +  K  TV +    GRKVG I A
Sbjct: 199 DHPFGGKRHSNHSKPFTVSKWAPPGRKVGYIGA 231


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 723,522,136
Number of Sequences: 1657284
Number of extensions: 13672387
Number of successful extensions: 29470
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 28255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29455
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)