Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_F08
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                       59   5e-09
11_06_0180 + 20962420-20962528,20962618-20962699,20962831-209629...    29   4.2  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 26/34 (76%), Positives = 28/34 (82%)
 Frame = -1

Query: 783 VEHPXGGGNHQHIGKASTVKRGTSAGRKVGLIAA 682
           VEHP GGGNHQHIG ASTV+R    G+KVGLIAA
Sbjct: 207 VEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240


>11_06_0180 +
           20962420-20962528,20962618-20962699,20962831-20962948,
           20963024-20963062,20963181-20963343,20963706-20963921,
           20964039-20964116,20964244-20964500,20964544-20964575,
           20964815-20965197,20965262-20965831,20966250-20966343,
           20966365-20966541,20966761-20966963,20968244-20968301,
           20969126-20969381,20969553-20969789
          Length = 1023

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 586 FSFYKLETFCSCSM*HTKVNKKILFYSR-KVIQKKNIIPVCM 464
           F+  K  + CSCS    +     ++Y+R  +IQK  II  C+
Sbjct: 8   FTLVKATSLCSCSTYFREAQLDRVYYARLSIIQKARIITECL 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,081,709
Number of Sequences: 37544
Number of extensions: 352207
Number of successful extensions: 697
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)