Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_F08
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.45 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = +2

Query: 248 KVEAYNENYTLVKNDVQDSNLTLMRHMPKTRVK*VLV*KENMNSAHYIEKESLFQIRSEQ 427
           K+E  ++   +V N     NL  + + P + V+   V K  MNS   +   SL     + 
Sbjct: 301 KMEKTSKPLPMVDNPESTGNLVYIYNNPFSDVEERRVSKTAMNSNQIVSDNSLSSSEEKL 360

Query: 428 K*YLIRLSGDLSHTN 472
           K  ++ L  D+S ++
Sbjct: 361 KQDILNLRTDISSSS 375


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 667 PSGPASSNKTNFATSRCSS 723
           P  PASS+ ++  TS CSS
Sbjct: 589 PDKPASSSASSAPTSVCSS 607


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = -1

Query: 186 HNSPSNNTY*IHGP-HSTYGLVKLHI 112
           HN+  NN Y   GP H T G    HI
Sbjct: 401 HNNLLNNVYSTPGPHHHTMGHGHSHI 426


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,142
Number of Sequences: 438
Number of extensions: 4368
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)