Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_F06
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...   168   6e-43
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    28   1.2  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    28   1.6  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    27   3.6  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    26   4.8  
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...    26   6.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.4  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.4  

>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score =  168 bits (409), Expect = 6e-43
 Identities = 73/132 (55%), Positives = 98/132 (74%)
 Frame = -3

Query: 729 GAYPPDLSXICSGRKGGEDYIFAXLTGYMEPPAGVVXREGQNYNPYFPGGAISMAQVLFD 550
           GA PPDLS +  GR GG+DYI++ LTGY EPPAGV   +G N+NP+FPG  I+MA+ LFD
Sbjct: 172 GAAPPDLSCVVRGRHGGQDYIYSLLTGYTEPPAGVEVPDGMNFNPFFPGTQIAMARPLFD 231

Query: 549 EAAEYSDGTPATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHK 370
           +A E+ DGTPAT +Q AKDV  FL W SEPELD R++M  + I + ++L A+  +YKR K
Sbjct: 232 DAVEFEDGTPATTAQAAKDVVNFLHWASEPELDIRKKMGFQVITVLTILTALSMWYKRFK 291

Query: 369 WSTLKSRKLAYK 334
           W+ +K+RK+ Y+
Sbjct: 292 WTPIKNRKIFYQ 303


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 690 RKGGEDY-IFAXLTGYMEPPAGVVXREGQNYNPYF 589
           R  G  Y + A L   + PP G + R   +Y PYF
Sbjct: 197 RNNGPSYSLLASLASQLPPPYGAMIRHTTSYVPYF 231


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 639 PPAGVVXREGQNYNPYFPGGAISMAQVLFDEAAEYSDGTPATAS 508
           P + V     +NY PY    ++S + +L +     S  TP TAS
Sbjct: 60  PTSNVASNTSENY-PYTGSKSLSSSSILSNSTISTSSSTPITAS 102


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/77 (24%), Positives = 32/77 (41%)
 Frame = -3

Query: 549 EAAEYSDGTPATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHK 370
           +AA+ SD    T       +A F+   S P LD+  QMT        +   +++Y     
Sbjct: 202 DAAQDSDKLVYTGDWDPASIADFIGVSSIPLLDELNQMTFGKYQQSGLPLGIIFYNSTES 261

Query: 369 WSTLKSRKLAYKPVSKK 319
              L      ++P++KK
Sbjct: 262 RDELYD---VFQPLAKK 275


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 447 GRPVRVLSTISRKSQHPWRAVTQSPACRHC 536
           GRP R+L+ +  +S+ PWR + +      C
Sbjct: 16  GRPKRILAPMVDQSELPWRILARRSGADLC 45


>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 633 QEVPCNQSVXRRCNLRRPY 689
           +E+PC Q V R C+L++ Y
Sbjct: 103 EEMPCEQLVRRVCDLKQGY 121


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +2

Query: 551 SNRTCAIEMAPPGKYGL*FCPSRXTTPAGGSM*PVSXAKM*SSPPLRPEQIXDKS 715
           SN   +I + P G+      P R     G    P+S ++  S+PP  P  I  +S
Sbjct: 345 SNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 464 SEHHFKKVATSLASCDAVAGVPSLYSAASS 553
           S  + ++VAT++ S +A    P LYS A S
Sbjct: 22  STRNIRRVATAIGSINANLESPQLYSLAKS 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,272
Number of Sequences: 5004
Number of extensions: 57375
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)