Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_F06
(731 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75533-7|CAA99820.1| 285|Caenorhabditis elegans Hypothetical pr... 161 4e-40
Z81575-3|CAB04629.2| 313|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical... 29 4.5
AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine sy... 29 4.5
Z78065-9|CAI79172.1| 273|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z78064-11|CAI79210.1| 273|Caenorhabditis elegans Hypothetical p... 28 5.9
AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp... 28 5.9
AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation transp... 28 5.9
AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical... 28 5.9
AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical... 28 5.9
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 28 7.8
>Z75533-7|CAA99820.1| 285|Caenorhabditis elegans Hypothetical
protein C54G4.8 protein.
Length = 285
Score = 161 bits (392), Expect = 4e-40
Identities = 74/140 (52%), Positives = 93/140 (66%)
Frame = -3
Query: 729 GAYPPDLSXICSGRKGGEDYIFAXLTGYMEPPAGVVXREGQNYNPYFPGGAISMAQVLFD 550
GA PPDLS + R GG+DY+F+ LTGY+E PAGV +G+ YNPYFPGG ISM Q LFD
Sbjct: 143 GAAPPDLSLMALARHGGDDYVFSLLTGYLEAPAGVKVDDGKAYNPYFPGGIISMPQQLFD 202
Query: 549 EAAEYSDGTPATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHK 370
E EY DGTPAT SQ AKDV+ F+ W +EP D R++ +K + +A V+ Y KRH
Sbjct: 203 EGIEYKDGTPATMSQQAKDVSAFMHWAAEPFHDTRKKWALKIAALIPFVAVVLIYGKRHI 262
Query: 369 WSTLKSRKLAYKPVSKK*TP 310
WS KS+K +K V + P
Sbjct: 263 WSFTKSQKFLFKTVKGREPP 282
>Z81575-3|CAB04629.2| 313|Caenorhabditis elegans Hypothetical
protein R08H2.3 protein.
Length = 313
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = -2
Query: 205 IACLLCYTGWLAVTLLPCVVP*TRNRIILCNYVYSI-----LPLRSRGTSQIVMLGDLSV 41
I LL + G L L C+ N ++ Y + LP+ I M+G L+V
Sbjct: 51 ILLLLHFVGALLDIFLSCLTTPVVNFPMISGYPLGLAVPLGLPINVLAYIGISMVGTLAV 110
Query: 40 TVLVIFHESSY 8
T+LV+F + Y
Sbjct: 111 TILVVFEDRHY 121
>AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical
protein Y46G5A.19 protein.
Length = 314
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 642 EPPAGVVXREGQNYNPYFPGGAISM--AQVLFDEAAEYSD 529
E P V+ +GQ +PG A S+ +VLF E ++Y D
Sbjct: 26 EEPTKVLKSDGQEMGGAWPGQAFSLQVKKVLFHEKSKYQD 65
>AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine
synthase protein.
Length = 314
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 642 EPPAGVVXREGQNYNPYFPGGAISM--AQVLFDEAAEYSD 529
E P V+ +GQ +PG A S+ +VLF E ++Y D
Sbjct: 26 EEPTKVLKSDGQEMGGAWPGQAFSLQVKKVLFHEKSKYQD 65
>Z78065-9|CAI79172.1| 273|Caenorhabditis elegans Hypothetical
protein F57B1.8 protein.
Length = 273
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 225 INLFYLPSRVYFVTRGGLL*LCYHAWSRRRETVL 124
I+ F L S V + GG L LC+ WSR ++ L
Sbjct: 6 ISSFVLSSLVSTILTGGFLVLCFILWSRFKQVRL 39
>Z78064-11|CAI79210.1| 273|Caenorhabditis elegans Hypothetical
protein F57B1.8 protein.
Length = 273
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 225 INLFYLPSRVYFVTRGGLL*LCYHAWSRRRETVL 124
I+ F L S V + GG L LC+ WSR ++ L
Sbjct: 6 ISSFVLSSLVSTILTGGFLVLCFILWSRFKQVRL 39
>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1121
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 648 YMEPPAGVVXREGQNYNPYFPGGAISMAQVLF 553
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1045
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 648 YMEPPAGVVXREGQNYNPYFPGGAISMAQVLF 553
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical
protein Y105E8A.12b protein.
Length = 1045
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 648 YMEPPAGVVXREGQNYNPYFPGGAISMAQVLF 553
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical
protein Y105E8A.12a protein.
Length = 1121
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 648 YMEPPAGVVXREGQNYNPYFPGGAISMAQVLF 553
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +2
Query: 434 VICRRSSSSGSEHHFKKVATSLASCDAVAGVPSLYSAASSNRTCAIEMAPPGKYGL*FCP 613
VIC+ G E+ K ATS + G L S+NRT + PG GL C
Sbjct: 1972 VICQCPQGLGGEYCEKITATSCHQLECKNGGYCLKPDPSANRTSPTCLCSPGFKGL-LCS 2030
Query: 614 S 616
S
Sbjct: 2031 S 2031
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,567,178
Number of Sequences: 27780
Number of extensions: 341857
Number of successful extensions: 947
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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