Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_F06
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.8  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 432 WSSADGRPVRVLSTISR 482
           WS+ADG PV  +  + R
Sbjct: 64  WSTADGHPVNDVPGVRR 80


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 432 WSSADGRPVRVLSTISR 482
           WS+ADG PV  +  + R
Sbjct: 64  WSTADGHPVNDVPGVRR 80


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 622 HYTSRRFHVTSQXREDVIFAALTSRA 699
           H T +RFH  +  +ED+  ++L   A
Sbjct: 403 HLTPKRFHSRAASKEDLSPSSLADGA 428


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 622 HYTSRRFHVTSQXREDVIFAALTSRA 699
           H T +RFH  +  +ED+  ++L   A
Sbjct: 403 HLTPKRFHSRAASKEDLSPSSLADGA 428


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 527 PSLYSAASSNRTCAIEMAPPGKYGL 601
           P LYS A S R C   +  P   GL
Sbjct: 9   PLLYSVAMSQRLCIQLVVGPYVIGL 33


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 527 PSLYSAASSNRTCAIEMAPPGKYGL 601
           P LYS A S R C   +  P   GL
Sbjct: 8   PLLYSVAMSQRLCIQLVVGPYVIGL 32


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = +2

Query: 20  MENHKHSYRQIT*HYNLTCATASQWQNAINIIT*DNTVSRLRDHAW 157
           MEN K  YR I   Y      ASQ    +  +  D  +   +   W
Sbjct: 1   MENQKEHYRHILLFYFRKGKNASQAHKKLCAVYGDEALKERQCQNW 46


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 74  CATASQWQNAIN 109
           C T  QW N+IN
Sbjct: 412 CRTPFQWDNSIN 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,972
Number of Sequences: 438
Number of extensions: 4171
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)