Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_F03
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0697 + 27331643-27331693,27331798-27331917,27332007-273320... 161 4e-40
02_05_0168 + 26423464-26423790,26423828-26423941,26424366-264244... 122 3e-28
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 87 2e-17
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 72 6e-13
02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136... 66 3e-11
12_02_0999 - 25134828-25135113,25135479-25135535,25136171-251362... 29 3.9
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 29 5.2
09_04_0362 - 16953108-16953155,16953478-16953562,16953626-169537... 28 6.9
>04_04_0697 +
27331643-27331693,27331798-27331917,27332007-27332057,
27332682-27332787,27333218-27333276,27333372-27333446,
27333909-27333957,27334064-27334140,27334400-27334483
Length = 223
Score = 161 bits (392), Expect = 4e-40
Identities = 82/218 (37%), Positives = 132/218 (60%), Gaps = 1/218 (0%)
Frame = -1
Query: 748 ESNPDVLNKFXQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKTE 569
E+NP+V+N+F + LGVP + DV GLD E L+ VP+PVL+V+LL+P D + +
Sbjct: 9 EANPEVMNQFMRGLGVPAEAGFCDVYGLDDEMLAMVPQPVLAVILLYP-QDRKKESVASP 67
Query: 568 ENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAKGL 392
+ + SK ++S N+++ KQ I NACGT+ ++H++ N I+L +G + +F + +
Sbjct: 68 SSTVESK--KLSKNVYFTKQTIGNACGTVGIIHAIGNALSRIKLVEGSYFDRFYKQTADM 125
Query: 391 DATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVHKDGALYELDGRKAF 212
D R LE+ E + AH G T A+D V H++ F D ++ELDG +
Sbjct: 126 DPAQRASFLEEDEEMEKAHSVAVSAGDTE---AKDGVIEHYVCFSCVDDEIFELDGGNSQ 182
Query: 211 PVNHGPTSQETLLEDAAKICKEFMARDPNEVRFTVIAL 98
P++HGP+S ++LL+DAAK+ K +A+ P + F V+AL
Sbjct: 183 PISHGPSSPDSLLQDAAKVIKARIAQYPGSLNFNVMAL 220
>02_05_0168 +
26423464-26423790,26423828-26423941,26424366-26424448,
26424756-26424804,26425789-26425894,26426460-26426518,
26426604-26426678,26427112-26427160,26427253-26427329,
26427662-26427744,26427852-26427867
Length = 345
Score = 122 bits (294), Expect = 3e-28
Identities = 57/149 (38%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
Frame = -1
Query: 541 EVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAKGLDATARGKLL 365
++S +++ KQ + NACGT+ ++H++ N ++L +G + +F + +D R L
Sbjct: 192 DLSKRVYFTKQTVGNACGTVGVIHAIGNAASKLKLVEGSYFDRFYKQTVDMDPVQRAAFL 251
Query: 364 EKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVHKDGALYELDGRKAFPVNHGPTSQ 185
E+ + + +AH A G T+ A VN HF+ F DG LYELDGRK+ P+ HGP+S
Sbjct: 252 EEDDEMEDAHSVAASAGDTD---ANVEVNEHFVCFSCVDGELYELDGRKSQPICHGPSSP 308
Query: 184 ETLLEDAAKICKEFMARDPNEVRFTVIAL 98
+TLL+DAAK+ K +A +P+ + F V+AL
Sbjct: 309 DTLLQDAAKVIKARIASNPDSMNFNVMAL 337
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -1
Query: 724 KFXQKLGVPN-KWNIVDVMGLDPETLSWVPRPVLSVMLLFPIS 599
+F LGV + DV GLD E L+ VP+PVL+V+ L+P++
Sbjct: 65 QFMWGLGVAEGEAQFCDVYGLDDELLAMVPQPVLAVLFLYPLT 107
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 86.6 bits (205), Expect = 2e-17
Identities = 68/201 (33%), Positives = 92/201 (45%), Gaps = 21/201 (10%)
Frame = -1
Query: 709 LGVPNKW-NIVDVMGLDPETLSWVPRPVLSVMLLFP------------------ISDAYE 587
LGVP DV LD + L VP+PVL+V+ FP +S
Sbjct: 144 LGVPEDVAEFHDVYSLDADALEMVPQPVLAVVFCFPDPTQLSTIMGFSLYLIYTLSPTSV 203
Query: 586 NHKKTEENEILSKGQEVSGNIFYMKQ--NISNACGTIALVHSVANNTDIIELSDGHMQKF 413
+L G++ + +F++KQ ++ NACGTIAL+H+V N I L
Sbjct: 204 QDASNPSQHLLITGEKET--LFFIKQIESLGNACGTIALLHAVGNAYSEISLCK------ 255
Query: 412 LNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVHKDGALYE 233
R LEK + + AH A G T D V H+I FV DG LYE
Sbjct: 256 -----------RAVFLEKDDDMARAHLSAASAGDTKL---SDDVEEHYICFVECDGTLYE 301
Query: 232 LDGRKAFPVNHGPTSQETLLE 170
LDG K P+NHGP+S ++LL+
Sbjct: 302 LDGMKPGPINHGPSSSKSLLQ 322
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 71.7 bits (168), Expect = 6e-13
Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
Frame = -1
Query: 529 NIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEG 350
N+F+ KQ I+NAC T A+V SV N+ I LS+ ++K AK L +G + SE
Sbjct: 123 NLFFAKQIINNACATQAIV-SVLLNSPGITLSE-ELKKLKEFAKDLPPDLKGLAIVNSES 180
Query: 349 IINAHKELAQEG--QTNTPSAEDPVNHHFISFVHKDGALYELDGRKAFPVNHG--PTSQE 182
I A A+ + S +D +HFIS+V DG LYELDG K P++ G P
Sbjct: 181 IRLASNSFARPEVPEEQKSSVKDDDVYHFISYVPVDGVLYELDGLKEGPISLGKCPGGVG 240
Query: 181 TL--LEDAAKICKEFMAR-DPNEVRFTVIALV 95
+ L + +E + R NE+RF+V+A++
Sbjct: 241 DIGWLRMVQPVIQERIDRFSQNEIRFSVMAIL 272
>02_05_1262 +
35312313-35312343,35312840-35312886,35313614-35313660,
35313740-35313842,35313924-35314691
Length = 331
Score = 66.1 bits (154), Expect = 3e-11
Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 10/228 (4%)
Frame = -1
Query: 748 ESNPDVLNKFXQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKTE 569
ES+P V + Q++ V + ++ LD +++S + RPV ++ LF + +K E
Sbjct: 7 ESDPGVFTELIQEMQVKGV-QVEELYSLDVDSISEL-RPVYGLIFLFK----WMAGEKDE 60
Query: 568 ENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLD 389
+ ++ + N+F+ Q I NAC T A++ + N E+ G L E G
Sbjct: 61 RPVV----KDPNPNLFFASQVIPNACATQAILSILMNRP---EIDIGPELSNLKEFTGAF 113
Query: 388 AT-ARGKLLEKSEGIINAHKELAQE----GQTNTPSAEDPVNHHFISFVHKDGALYELDG 224
A +G + S+ I AH A+ + +D +HFIS++ +G LYELDG
Sbjct: 114 APDMKGLAINNSDSIRTAHNSFARPEPFVSDEQRAAGKDDEVYHFISYLPFEGVLYELDG 173
Query: 223 RKAFPV-----NHGPTSQETLLEDAAKICKEFMARDPNEVRFTVIALV 95
K P+ + GP + L I K +E+RF ++A++
Sbjct: 174 LKEGPISLGQCSGGPDDLDWLRMVQPVIQKRIERYSQSEIRFNLMAII 221
>12_02_0999 -
25134828-25135113,25135479-25135535,25136171-25136296,
25136399-25137289,25137379-25137533
Length = 504
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -1
Query: 307 NTPSAEDPVNHHFISFVHKDGALYELDGRKAFPVNHGPTSQE 182
++PSA ++ F+S + DG++ L+G+ F + GP + +
Sbjct: 273 DSPSATGTMSSAFMSSLSMDGSVASLEGKPPFHLISGPVASD 314
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = -1
Query: 610 FPISDAYENHKKTEENEIL-SKGQEVSGNIFYMKQNISNACGTIALVHSVANN 455
+ +SD + +++ EE E+L ++ +E + + +N+S+ C T+ + V N+
Sbjct: 2692 YRVSDGKDPYEQMEEEELLRNRLEESEQDRSKLAENLSSLCATVLKIAGVRNH 2744
>09_04_0362 -
16953108-16953155,16953478-16953562,16953626-16953702,
16954601-16954641,16955140-16955644,16955897-16956316
Length = 391
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 651 SVSGSSPMTSTIFHLFGTPSFCXNLFRTSG 740
S S+P +S++F TP+ NLF TSG
Sbjct: 230 STPASAPSSSSLFSTPTTPTLSSNLFGTSG 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,716,638
Number of Sequences: 37544
Number of extensions: 368800
Number of successful extensions: 881
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -