Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_F02
         (624 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000065D155 Cluster: Myosin-VI (Unconventional myosin...    35   1.8  
UniRef50_A1ZWS0 Cluster: Leucine-rich repeat containing protein;...    33   7.3  

>UniRef50_UPI000065D155 Cluster: Myosin-VI (Unconventional myosin
           VI).; n=1; Takifugu rubripes|Rep: Myosin-VI
           (Unconventional myosin VI). - Takifugu rubripes
          Length = 1216

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 142 VCNTWKKINVLFFNVVKLRGKMERLQCLSVKCSKTI*KYL 23
           VC+ WKK+     +V+KLR KM       +K  KT+  +L
Sbjct: 761 VCSCWKKVQWCSLSVIKLRNKMSYRALACIKIQKTVRMWL 800


>UniRef50_A1ZWS0 Cluster: Leucine-rich repeat containing protein;
           n=1; Microscilla marina ATCC 23134|Rep: Leucine-rich
           repeat containing protein - Microscilla marina ATCC
           23134
          Length = 861

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +3

Query: 48  HLTLRHCNLSILPLNFTTLKNKT 116
           HL+L  CNL  LP NFT L+N T
Sbjct: 160 HLSLNDCNLRKLPANFTKLQNVT 182


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 500,501,970
Number of Sequences: 1657284
Number of extensions: 8343292
Number of successful extensions: 17291
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17289
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)