Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_E21
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986...    28   4.8  
12_01_0945 + 9351915-9351929,9352221-9352386,9352903-9353024,935...    27   8.3  

>01_01_1220 +
           9862195-9862281,9862427-9862646,9862764-9862916,
           9863016-9863674,9863749-9863852,9863950-9864192,
           9864262-9864376,9864696-9864909,9864995-9865511,
           9866439-9866448,9867363-9867551,9867755-9868084,
           9868639-9868872,9869303-9869743
          Length = 1171

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 441 GHPRTVSFCRRRIVCRHASRTWTLLEFWAG 530
           GH R VS  R R +  H +R+W  L+  +G
Sbjct: 103 GHERVVSVFRDRALELHTTRSWDFLDVQSG 132


>12_01_0945 +
           9351915-9351929,9352221-9352386,9352903-9353024,
           9353098-9353214,9356997-9357077,9357204-9357272,
           9357727-9357790,9357988-9358067,9358164-9358247,
           9358418-9358502,9359658-9359743,9359924-9360045,
           9360841-9360901,9360981-9361166,9363622-9363723,
           9363803-9363844,9363949-9364086
          Length = 539

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +3

Query: 396 SLATPSRGSPCSVSLGHPRTVSFCRR---RIVCRHASRTWTLLEFWAGACL*ALRGRD 560
           S+  PS  + CS+  G  +TV  C R   R+VC H  R     +F+ G C   L  RD
Sbjct: 435 SILVPSDANYCSIREGRTQTVGECLRREYRMVC-HVMRGDFSRDFFEG-CRAILLDRD 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,659,044
Number of Sequences: 37544
Number of extensions: 165650
Number of successful extensions: 609
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)