Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_E18
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   1.7  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   9.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   9.2  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 110 WRHVIPIPIANVPEH**TRISKL 178
           W+  IP+ +  VP+H  T+  KL
Sbjct: 206 WKDGIPVTLTTVPKHSKTKSPKL 228


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 593 KLLCTSVKLLFYSVKFL 643
           KL C + K L+Y++ ++
Sbjct: 98  KLYCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 593 KLLCTSVKLLFYSVKFL 643
           KL C + K L+Y++ ++
Sbjct: 98  KLYCNNYKKLYYNINYI 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,586
Number of Sequences: 438
Number of extensions: 3700
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)