Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_E15
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51... 40 4e-04
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 36 0.006
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ... 32 0.075
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 28 1.2
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 1.6
SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa... 26 3.7
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 26 5.0
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar... 25 8.7
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 25 8.7
>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
L51|Schizosaccharomyces pombe|chr 2|||Manual
Length = 145
Score = 39.5 bits (88), Expect = 4e-04
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = -1
Query: 482 KNGVGRYVCQLQRIVFKFCKSNGASRGMRDFIEQDLVDFSKD 357
KNG+G + +RI F +C G+S+GM++F+ L +K+
Sbjct: 13 KNGLGSFTRPCRRIEFSYCNWGGSSKGMKEFLSTKLESLAKE 54
Score = 28.3 bits (60), Expect = 0.93
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = -2
Query: 361 KTXPGVVVYLKPRRHRGPVIVGEYLNGDRLWMSVHNKTHEEIVKWVELFRTQQGNNWNSR 182
K V ++ R+ + P+I Y G + + I + L R G R
Sbjct: 53 KESQDVEFHVTNRQGKHPLIRAYYNTGREKVICTRKMSASSIFQKAILCRDSDG--LKPR 110
Query: 181 LRKYQY-TNHPSVQGPWTPFT 122
L KY + +PSV+G W+PF+
Sbjct: 111 LIKYPVESTNPSVRGIWSPFS 131
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 35.5 bits (78), Expect = 0.006
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 75 NLTSGSSAVFNSGSLNVNGVQGPWTEGWFVYWYLRSLEFQLLPC*VR 215
++T S + G+ PWT+ W W+L SL++ C ++
Sbjct: 425 SITKIKSLFYERKEYTAKGISQPWTQLWVTLWFLSSLQYYAYECVIK 471
>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 31.9 bits (69), Expect = 0.075
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 520 LLADIYFVFQPLHLNSW-VMLCYALHXL 600
L+ D + VFQP H+ SW VML LH +
Sbjct: 97 LIKDKFIVFQPAHIKSWMVMLLRGLHHI 124
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 203 LLSSEQFDPFYDLLVGFVVDAHPQSVPVQIFPNYD 307
+L ++ + YD+ GFV P+ P ++FP+ D
Sbjct: 55 VLDDDRANASYDISSGFVHIKFPKETPGEVFPDLD 89
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 187 SRLRKYQYTNHPSVQGPWTPFTFKDPELNTAELP 86
SRL+K ++ N P+ +G +T +T + + E P
Sbjct: 744 SRLKKEKHKNRPASKGTYTTYTSSEERQRSTEDP 777
>SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit
Psf2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 183
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 221 IVPNSTRQQLELETPQVPVHEPP 153
IVP+ T QL L + +P+ +PP
Sbjct: 27 IVPSETMDQLPLVSATIPIMKPP 49
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 319 VYVALNTPPLQGLSFEKSTKSCSMKSLIPRLAP-LDLQNLKTIL 447
+ + ++ PP Q L E + MK PR AP + +Q L+ +L
Sbjct: 720 INILMDGPPAQSLGVESVDEDVMMKPPRPRNAPIISVQLLQRVL 763
>SPBC354.02c |sec61||translocon alpha subunit
Sec61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 152 GVVRVLVLAESRVPVVALLSSEQFDP 229
GV ++ L S+VP+ ++SS+ DP
Sbjct: 37 GVTLLIFLVMSQVPLYGIVSSDSSDP 62
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 370 ISQKTXPGVVVYLKPRRHRGPVIVGEYLNGDRLWMSVHN 254
+S+ T V +KP P + EYL+ + +SVH+
Sbjct: 50 VSKSTTKKSSVVIKPSTITAPWLENEYLDSNTSLLSVHS 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,281
Number of Sequences: 5004
Number of extensions: 60718
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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