Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_E12
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    90   1e-19
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    27   1.8  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    26   2.4  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   5.5  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   5.5  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   7.3  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   7.3  
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    25   7.3  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    24   9.6  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    24   9.6  

>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 90.2 bits (214), Expect = 1e-19
 Identities = 49/122 (40%), Positives = 75/122 (61%), Gaps = 17/122 (13%)
 Frame = -3

Query: 320 LGDFLLQLENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCK 141
           L +FL Q+++Y+P IPD ++ YYL+L+GF+  DPRL +L+ L +QKF+SD+  DA Q+ K
Sbjct: 93  LENFLAQMDDYSPLIPDVLLDYYLSLSGFKCVDPRLKKLLGLTAQKFISDVAQDAYQYSK 152

Query: 140 MRTSNQINQS-----------------SKNQKGPKEKKYVMTMDDLAPALQEYGITAKKP 12
           +RT +    S                 S  ++G + K  V+T+DDL+ AL EYGI  K+P
Sbjct: 153 IRTGSSNASSTTFGAQNFGAGGASGIGSSGRRGDRGKT-VLTVDDLSAALNEYGINLKRP 211

Query: 11  HY 6
            +
Sbjct: 212 DF 213


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 137 RTSNQINQSSKNQKGPKEKKYVMTMDDLAPALQEYGITAKKP 12
           ++S   N  S+N + PK  K +  +D+L  A ++ G     P
Sbjct: 30  KSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTP 71


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 236 FESQDPRLVRLIALASQKFLSD-IVNDALQHCKMRTSNQINQSSKNQKGPKEKKYVMTMD 60
           FES D + +R       K LSD  + DALQHC  R +++  +  K  K      Y++T  
Sbjct: 157 FESADKKKIR-------KGLSDGPLVDALQHCGFRYNDKWAKRVKEPKLMSLMSYIITTV 209

Query: 59  DLAPALQEY 33
           + +   +E+
Sbjct: 210 ESSSLSEEF 218


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 54  QIVHGHDIFLLFGSLLVFGALI 119
           +++H HD    FG +L  G LI
Sbjct: 51  ELIHSHDSHERFGGILAIGKLI 72


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 275 PDSVVAYYLNLTGFESQDPRLVRLIALASQK 183
           PD+ V   +  TGFE+    LVR +  +S+K
Sbjct: 359 PDNGVPAIVLRTGFETSQGSLVRTMVFSSEK 389


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 379  ICIALVKISLINAFLTFNNYCNF 447
            + I+L+ +S    FLT NNY N+
Sbjct: 1114 VIISLLLVSSWEKFLTSNNYSNY 1136


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
 Frame = -3

Query: 305 LQLENYNPSIPD---SVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCKMR 135
           ++L+NYNPS+ +   +V+A + ++    + D ++  ++ L +  + S+ +   + H    
Sbjct: 344 IELDNYNPSLENCSSAVIALWEDIK--TAVDTKITGVLRLRNAIYYSERIRLEIDHHVQE 401

Query: 134 -----TSNQINQSSKNQKGPKEKKYV--MTMDDLAPALQ 39
                 SN +   S    G  E K    +T  D   AL+
Sbjct: 402 IIDDVVSNLVTNHSSTSLGHLESKLAPSITFPDACDALE 440


>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 227 VTRIRLNSNNMRPRNRVWMDYNSQAE 304
           V R+  N   MR R R WM Y    E
Sbjct: 163 VERLEDNYPEMRKRRRKWMSYQEAKE 188


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 230 SQDPR-LVRLIALASQKFLSDIVNDALQHCKMRTSNQINQ 114
           S+D R +++ I  +  KFL +I+ D  +H K   +  I+Q
Sbjct: 371 SRDYRFIIKTIHHSEHKFLREILYDYYEHVKNNPNTLISQ 410


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = -3

Query: 305 LQLENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCKMRTSN 126
           L L++  PS+ ++V++     +        L + +A A +       ND     K + + 
Sbjct: 323 LDLKHGAPSLEEAVMSKMHESSLLSKDSSSLAQAVAEAVKN-----ANDLGGLVKRKRTK 377

Query: 125 QINQSSKNQKGPKEKK 78
           Q   SS  ++GPK+KK
Sbjct: 378 QEVTSSSQKEGPKDKK 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,753,191
Number of Sequences: 5004
Number of extensions: 33164
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)