Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_E12
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0216 - 15727044-15727124,15728557-15728607,15728695-157287... 112 1e-25
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275... 28 4.1
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687... 27 5.4
12_02_0058 + 13015401-13016654 27 7.2
04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911 27 7.2
12_02_1157 + 26565040-26565081,26565189-26565262,26565343-265654... 27 9.5
08_02_1605 - 28166338-28166418,28166496-28166567,28166655-281667... 27 9.5
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 27 9.5
03_05_0902 + 28643395-28643708,28643830-28643921,28644342-286444... 27 9.5
>09_04_0216 -
15727044-15727124,15728557-15728607,15728695-15728752,
15729336-15729398,15729740-15729804,15729901-15730038
Length = 151
Score = 112 bits (270), Expect = 1e-25
Identities = 52/105 (49%), Positives = 73/105 (69%)
Frame = -3
Query: 320 LGDFLLQLENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCK 141
L +FL L +Y P+IPD +V +YL +GF D RL RL+A+A+QKF+SDI +D+LQHCK
Sbjct: 33 LTEFLSSLMDYTPTIPDELVEHYLGRSGFYCPDLRLTRLVAVATQKFISDIASDSLQHCK 92
Query: 140 MRTSNQINQSSKNQKGPKEKKYVMTMDDLAPALQEYGITAKKPHY 6
R + I + Q PK+++ V+TMDDL+ ALQE+G+ K P Y
Sbjct: 93 ARVAAPIKDNKSKQ--PKDRRLVLTMDDLSKALQEHGVNLKHPEY 135
>07_03_1691 -
28726307-28726323,28726588-28726953,28727483-28727567,
28728255-28728387,28729793-28730328
Length = 378
Score = 27.9 bits (59), Expect = 4.1
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Frame = -3
Query: 299 LENYNPSIPDSVVAYYLNLTGFESQDPRL-VRLIALASQKFLSDIVNDAL----QHCKMR 135
L+ ++ + + + TG +++ L +RL A+ Q L D +NDAL + K+
Sbjct: 208 LQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQEVERLKIA 267
Query: 134 TSNQINQSSKNQKGPKEKKYVMTMDDLAP--ALQEYGITAKKPH 9
T + G ++ Y + L+ A+Q + + PH
Sbjct: 268 TGEMAKSNDAYNTGMQQVPYSPSFFQLSDQHAVQHHAGVQQLPH 311
>06_01_1193 +
10264360-10264504,10264763-10264910,10268350-10268748,
10268925-10271214
Length = 993
Score = 27.5 bits (58), Expect = 5.4
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -3
Query: 245 LTGFESQDPRLVRLIALASQKFLSDIVNDALQHCKMRTSNQI-NQSSKNQKGPKEKKYVM 69
L GF R+ L + Q S+ ++ LQ + + QI + S +K KEK+Y +
Sbjct: 222 LVGFSDSKIRIELLKDMIRQFLGSNSLDQVLQELQGKMVVQIPHLSDYLRKKLKEKRYFV 281
Query: 68 TMDDL 54
+DDL
Sbjct: 282 VLDDL 286
>12_02_0058 + 13015401-13016654
Length = 417
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = -3
Query: 314 DFLLQLE-NYNPSIPDSVVAYYL 249
DFLL+L +NPS P+ VV YYL
Sbjct: 7 DFLLELGFRFNPS-PEQVVTYYL 28
>04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911
Length = 575
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = -3
Query: 221 PRLVRLIALASQKFLSDIVNDALQHCKMRTSNQINQSSKNQKGPK 87
PR L+ ++ + F +D + HCK+ + ++ +GP+
Sbjct: 125 PRFRALVLISCEGFSTDGLAAVASHCKLLRELDLQENEVEDRGPR 169
>12_02_1157 +
26565040-26565081,26565189-26565262,26565343-26565460,
26565547-26565617,26565704-26565869,26565946-26566145,
26566669-26566880,26567404-26567522,26567952-26568053,
26568144-26568253,26568340-26568427,26568574-26568606,
26568635-26568834,26568916-26569120
Length = 579
Score = 26.6 bits (56), Expect = 9.5
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3
Query: 185 KFLSDIVNDALQHCKMRTSNQINQSSKNQKGPKEKKYVMTMDDLAPALQ-EYGITAK 18
K++S V + K R + N + N+K PK V T D +P+L YG +AK
Sbjct: 54 KYISTRVTEVFPVKKSRNLGKENFKN-NEKAPKSADAVTTSDFASPSLPCGYGDSAK 109
>08_02_1605 - 28166338-28166418,28166496-28166567,28166655-28166771,
28166846-28166956,28167077-28167252,28167340-28167421,
28167662-28167808,28167887-28168252,28168558-28168741,
28169104-28169213,28169452-28169508,28169589-28169600,
28169899-28169961,28170010-28170057,28170166-28170246,
28170326-28170389,28170661-28170686,28170782-28170868,
28170942-28170969,28171194-28171255,28171364-28171576,
28171667-28171774,28171948-28172022,28172136-28172249,
28172597-28172644,28172688-28172767,28172974-28173049,
28173287-28173427,28173685-28173762,28175100-28175204,
28177061-28177147,28177287-28178579
Length = 1463
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 368 GSPSVGMDDDGCAGHALGDFLLQLENYNPSIPDSVVAYY 252
GSP DG LG+ +LQL+ NP + +V+ +
Sbjct: 1384 GSPVNFHAKDGSGYKFLGEVVLQLDKINPQVASRMVSAF 1422
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 346 SIPTDGEPIRLICIALVKISLINAFLTFNNYCNFN 450
S+P G PI A ++A TF+ CNF+
Sbjct: 117 SVPATGSPIYAQIEAQTVFGALHALETFSQLCNFD 151
>03_05_0902 +
28643395-28643708,28643830-28643921,28644342-28644443,
28645135-28645185,28645267-28645328,28645664-28645754,
28645911-28645975,28646053-28646247,28646346-28646465,
28646630-28646700,28646839-28647064,28647474-28647524,
28647629-28647857,28648140-28648279,28648527-28648652
Length = 644
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -3
Query: 179 LSDIVNDALQHCKMRTS--NQINQSSKNQKGPKEKKYVMTMDDLAPALQE 36
L + + A+ HC+++ + N +N+ + G KEKK + M D PAL E
Sbjct: 571 LRNTIPKAVVHCQVKEAKRNLLNRFYAHV-GSKEKKQLSAMLDEDPALME 619
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,998,657
Number of Sequences: 37544
Number of extensions: 206269
Number of successful extensions: 610
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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