Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_pT_E07
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal pro... 214 6e-56
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr... 31 0.60
U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical pr... 31 0.80
Z81063-1|CAB02952.1| 376|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z46381-1|CAA86513.1| 437|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF082012-1|AAD03024.1| 437|Caenorhabditis elegans UDP-N-acetylg... 29 2.4
Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF098999-4|AAC68729.1| 659|Caenorhabditis elegans Hypothetical ... 29 4.3
AF036692-8|AAB88329.1| 162|Caenorhabditis elegans Hypothetical ... 28 5.6
>AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 19 protein.
Length = 198
Score = 214 bits (522), Expect = 6e-56
Identities = 96/158 (60%), Positives = 123/158 (77%)
Frame = -2
Query: 615 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 436
MS+L+LQKRLA++V++CGK +VWLDPNE++EI+ NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1 MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60
Query: 435 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 256
R R+ EARRKGRH G+GKRRGTANARMP+K LW R AKK+D+HLY
Sbjct: 61 FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120
Query: 255 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 142
H LY++AKGN FKNK+ L+EYI +KK E R K L+DQ
Sbjct: 121 HELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158
>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
ZC373.4 protein.
Length = 1211
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2
Query: 519 ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 385
++T+S +N+R ++ D +K V H R ++E R+K R G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099
>U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical
protein K09E3.1 protein.
Length = 675
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 116 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 12
RRHAS +PP NC +P+ ++T+ + L ++
Sbjct: 14 RRHASEGGTPIPPTPANCGKPTKKRTRGHVSLATR 48
>Z81063-1|CAB02952.1| 376|Caenorhabditis elegans Hypothetical
protein F15D3.2 protein.
Length = 376
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 69 PPSWRQYVPRGACVPP 116
P SW QY P+G C+ P
Sbjct: 221 PNSWHQYQPKGTCIQP 236
>Z46381-1|CAA86513.1| 437|Caenorhabditis elegans Hypothetical
protein M01F1.1 protein.
Length = 437
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 589 PLLQLEGTHPDTVRSNAHXKELIIGRPNSFKFPI 690
P++ PD+VR AH ++LI+ RP++ +FPI
Sbjct: 90 PVIVFSCNRPDSVR--AHVEKLIMYRPSAQQFPI 121
>AF082012-1|AAD03024.1| 437|Caenorhabditis elegans
UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
2-N-acetylglucosaminyltransferase I protein.
Length = 437
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 589 PLLQLEGTHPDTVRSNAHXKELIIGRPNSFKFPI 690
P++ PD+VR AH ++LI+ RP++ +FPI
Sbjct: 90 PVIVFSCNRPDSVR--AHVEKLIMYRPSAQQFPI 121
>Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical
protein ZK1058.5 protein.
Length = 269
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 507 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 394
S +N+RKMIK G V+ + ++ A +R EAR R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208
>AF098999-4|AAC68729.1| 659|Caenorhabditis elegans Hypothetical
protein W04C9.6 protein.
Length = 659
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 400 LSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGVGVCDLIDFI 537
++T FC+FAD S + R DD+ ++ + SG + D+I F+
Sbjct: 435 VNTIFCLFADASPAKWT-RLQDDDVAIEEEKEEYSG-SIEDIIKFL 478
>AF036692-8|AAB88329.1| 162|Caenorhabditis elegans Hypothetical
protein C44B12.6 protein.
Length = 162
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 95 RNVLPPRRRNCCRPSLEKTKPRLP 24
R++L P+ R+C PS++K+ LP
Sbjct: 51 RHMLTPKSRDCSEPSIDKSSEVLP 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,435,600
Number of Sequences: 27780
Number of extensions: 322640
Number of successful extensions: 916
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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