Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_E03
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1060 + 10958632-10958871,10959006-10959272                      223   1e-58
06_03_0249 + 18700299-18700769,18700848-18701309,18701391-187022...    27   9.7  
04_01_0040 - 461877-462484,463099-463399                               27   9.7  

>12_01_1060 + 10958632-10958871,10959006-10959272
          Length = 168

 Score =  223 bits (544), Expect = 1e-58
 Identities = 102/126 (80%), Positives = 111/126 (88%)
 Frame = -1

Query: 451 DFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMDELKRI 272
           +FY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE +V P V+ E +RI
Sbjct: 16  EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRI 75

Query: 271 IIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRGFY 92
           I +SEIM EDD  WP+PDRVGRQELEIV+G EHISFTTSK GSLVDV  S+DPEGLR FY
Sbjct: 76  IQESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFY 135

Query: 91  YLVQDL 74
           YLVQ L
Sbjct: 136 YLVQVL 141


>06_03_0249 +
           18700299-18700769,18700848-18701309,18701391-18702223,
           18702306-18702476,18702556-18702856
          Length = 745

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 517 YTKRKLLNDEK--TLKRKLSVKLISELNFRLHSRV 615
           Y KRK+  +EK   LK +L V+ I EL   +++RV
Sbjct: 215 YRKRKVSKEEKDARLKAELKVEAIQELEASMNARV 249


>04_01_0040 - 461877-462484,463099-463399
          Length = 302

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 295 HKGEHRLLYVSLYRFYSWNYWHNAVSRQAGIQIR 396
           H+ EH+L+ + + RF+ W   HN     A  ++R
Sbjct: 42  HEKEHQLMMMMMDRFHRWMATHNRSYASADEKLR 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,835,861
Number of Sequences: 37544
Number of extensions: 285936
Number of successful extensions: 622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)