Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_D23
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    27   2.3  
SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr...    27   3.1  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    26   5.3  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    26   5.3  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    25   9.3  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    25   9.3  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   9.3  

>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -2

Query: 627 SPHFNGLAEAAVKAXKGHXXKLXSLTHLTYEEMSSXLCQIEAIXNSRPLTPISSDPLDLT 448
           SP+F G A AA++  +    KL S      E +S  L        S+ + P   D L+  
Sbjct: 314 SPYFTGSAIAALRFLESFPEKLPSEKVSFMESLSKNLTTFPYRIQSQKILPTLLDHLNDQ 373

Query: 447 ALTPA 433
            L P+
Sbjct: 374 KLVPS 378


>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -2

Query: 303 EYISLLQQKSKWSTSTGSLIPGTLVLVKDRTLPALLW 193
           E   LL++   WS  T    P      KD   P +LW
Sbjct: 40  EIKDLLERNLTWSQQTSRKYPSFFTATKDIQTPQVLW 76


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
 Frame = -2

Query: 306 NEYISLLQQKSKWSTSTGSLIPGTLVL-VKDRTL-----PALLWP---LGRITKTYPGSD 154
           N  ++  QQK   ST   SL+P  L L  + R L       L+ P   LG IT      D
Sbjct: 256 NGSLNPAQQKCDGSTFLKSLVPSLLSLDTEGRVLRLDSFSKLIAPGTRLGYITGNSMFID 315

Query: 153 GITRVAEVKTRT 118
            ITR+AEV T +
Sbjct: 316 HITRIAEVCTES 327


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 360 ERYQRVELIRQHFWKRFINEYISLLQQKSKWSTSTGS 250
           +RY + E +R+  W R ++  ISL Q  S  +TS+ S
Sbjct: 105 DRYYQ-EALRKKSWSRSLSNNISLSQSSSSPATSSFS 140


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -2

Query: 297 ISLLQQKSKWSTSTGSLIPGTLVLVKDRTLPALLWPLGRITKTYPGSDGITRVAE 133
           + LL ++   ST   +L+P   V     T+         I    PGS GI ++ E
Sbjct: 18  LRLLSKRKSKSTPYNALLPNVTVFAMGGTIAGCANSSLEIVNYIPGSVGIEKLIE 72


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -2

Query: 297 ISLLQQKSKWSTSTGSLIPGTLVLVKDRTLPALLWPLGRITKTYPGSDGITRVAE 133
           + LL ++   ST   +L+P   V     T+         I    PGS GI ++ E
Sbjct: 18  LRLLSKRKSKSTPYNALLPNVTVFAMGGTIAGCANSSLEIVNYIPGSVGIEKLIE 72


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 215  LSFTRTSVPGIKLPVEVDHLDFC 283
            L  T+     I LP+  DH+DFC
Sbjct: 965  LRLTKKLKKPITLPLYADHIDFC 987


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,088
Number of Sequences: 5004
Number of extensions: 42579
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)