Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_D23
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0019 + 208204-208533,208642-208844,208969-209107                 33   0.26 
04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521...    29   2.4  
06_03_0821 - 25003001-25003336,25004248-25004376,25004984-250050...    29   3.2  
08_02_1238 + 25486263-25487574,25488210-25489117                       29   4.2  
01_06_1738 + 39570411-39571931                                         28   5.5  
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726...    28   7.3  
01_01_1213 - 9769268-9769975                                           28   7.3  
07_01_0314 - 2219664-2221091                                           27   9.7  

>06_01_0019 + 208204-208533,208642-208844,208969-209107
          Length = 223

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 112 GPRPRLDLCDPCDAVAARIRLGNAA 186
           G  PR  LCD C+A AA +RL + A
Sbjct: 44  GDHPRAPLCDSCNAAAAELRLNDGA 68


>04_01_0399 -
           5214183-5214206,5215437-5215502,5219537-5219635,
           5219746-5219817,5219918-5220491,5220575-5220687,
           5220842-5220941,5221059-5221181,5221268-5221335,
           5221461-5221610,5221715-5221858,5222097-5222288,
           5222710-5222794,5222892-5223043,5223138-5223296,
           5223552-5223605,5223698-5223836,5223955-5224088,
           5224200-5225117
          Length = 1121

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 468 SDPLDLTALTPAHFLIGRPLTSVPHPQ 388
           +D +DLTA  P  +L  RP+ +VP P+
Sbjct: 176 ADTIDLTATHPVPYLNPRPIRAVPPPE 202


>06_03_0821 -
           25003001-25003336,25004248-25004376,25004984-25005040,
           25005435-25005539
          Length = 208

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 419 DDRSRQFRTRRLPTATSRAWSATNEWNSS 333
           +DR    R +++   +S AWS   EWN+S
Sbjct: 167 EDRPPATRLKQIEGRSSAAWSGAREWNTS 195


>08_02_1238 + 25486263-25487574,25488210-25489117
          Length = 739

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 489 RPLTPISSDPLDLTALTPAHFLIG 418
           RP TP+ + PLDL+ L P    +G
Sbjct: 245 RPATPVLASPLDLSELVPERAYLG 268


>01_06_1738 + 39570411-39571931
          Length = 506

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 91  HLPPPSSLKYRSSLRAATPPATLNLL 14
           HL PPS L    S+ A+TP A L +L
Sbjct: 56  HLSPPSPLPALPSVHASTPAALLRIL 81


>09_06_0087 +
           20771329-20771450,20771462-20771771,20771893-20772672,
           20772854-20774002
          Length = 786

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -1

Query: 430 LSDWTTAHVSSAPADYRRQHHALGALPTSG----THQAA 326
           L  W   HV+S    YR++H     LPTSG    TH+AA
Sbjct: 587 LGPWPEVHVASPQIVYRKRH----LLPTSGRKWPTHRAA 621


>01_01_1213 - 9769268-9769975
          Length = 235

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 415 TAHVSSAPADYRRQHHALGALPTSGTHQA 329
           T ++++ PAD+RR    +   P  G H A
Sbjct: 106 TTYITADPADFRRMVQEITGFPVPGAHTA 134


>07_01_0314 - 2219664-2221091
          Length = 475

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 312 FINEYISLLQQKSKWSTSTGSLIPGTLVLVKDRTLPALLWP-LGRITKTYPGSDGITRVA 136
           F  E ++ L+++++W         G   + + + L +LLW  + R  +  PG + + R A
Sbjct: 250 FSAESLAALKERARWELLAAGDAAGAAAVTRFQALSSLLWRCVTRARRLAPGREVVFR-A 308

Query: 135 EVKTR 121
            V +R
Sbjct: 309 SVNSR 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,397,381
Number of Sequences: 37544
Number of extensions: 331059
Number of successful extensions: 991
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)