Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_pT_D23
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   7.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.7  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 185 PKGHNRAGSVLSFTRTSVPGIKLPVEVD 268
           P G+ +  ++ S   + +PG  LP++VD
Sbjct: 38  PNGYAKLAAIKS--GSYIPGASLPIDVD 63


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 5/22 (22%), Positives = 15/22 (68%)
 Frame = -3

Query: 377 ATSRAWSATNEWNSSGSIFGSA 312
           + +++W+  N+W  + + +G+A
Sbjct: 691 SVNKSWNKWNDWQETQNNYGAA 712


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 5/22 (22%), Positives = 15/22 (68%)
 Frame = -3

Query: 377 ATSRAWSATNEWNSSGSIFGSA 312
           + +++W+  N+W  + + +G+A
Sbjct: 691 SVNKSWNKWNDWQETQNNYGAA 712


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 5/22 (22%), Positives = 15/22 (68%)
 Frame = -3

Query: 377 ATSRAWSATNEWNSSGSIFGSA 312
           + +++W+  N+W  + + +G+A
Sbjct: 691 SVNKSWNKWNDWQETQNNYGAA 712


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 475 YFL*SVRFNCPYSCSLSDWT 416
           Y++ + R+  PYS S   WT
Sbjct: 54  YYIYNPRYPLPYSGSKCTWT 73


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 552 THLTYEEMSSXLCQIEAIXNSRPLTPISSDPLD 454
           +H T E   S    I+     + LTPI S+P+D
Sbjct: 234 SHTTDENRHSSTLDID----HKMLTPIKSEPID 262


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 480 TPISSDPLDLTALTPAHFLIGRPLTSVP 397
           TP+   PLD+++    H L G  +   P
Sbjct: 259 TPLDEKPLDVSSNDKVHPLYGHGVCKWP 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,572
Number of Sequences: 438
Number of extensions: 3149
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)